View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_high_5 (Length: 579)
Name: NF12924_high_5
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 89 - 564
Target Start/End: Complemental strand, 25953410 - 25952928
Alignment:
| Q |
89 |
tacttatgattgacaagtttatcatgtgacctcattcctatgtgtgtaaaatggaaaaacataacacaataatattcttatgagatatttcataataatt |
188 |
Q |
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| T |
25953410 |
tacttatgattgacaagtttatcatgtgacctccttcctaggtgcctaaaatggaaaatg-taataca-taatattcttatgagatatttcataataatt |
25953313 |
T |
|
| Q |
189 |
ataatattatgaagnnnnnnnnataacttcaaaagggtgaaaaatatttaattatttttaagagagaacaataacttaaaacactataaatgatcaaacc |
288 |
Q |
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| T |
25953312 |
ataatattatgaagttttttt-ataacttcaaaagggtgaaaaatatttaattatttttaagagagaa--ataacttaaaacactataaatgatcaaacc |
25953216 |
T |
|
| Q |
289 |
atattctattagttacataaaagaggaaatatatggatgaaattctcaagtttgttttttgtatgattatatttctt------------atcgcaacaaa |
376 |
Q |
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| T |
25953215 |
atattctattagttacataaaagaggaaatatatggatgaaattctcaagtttgttttttgtatgattatatttctttcattatttcttatcgcaacaaa |
25953116 |
T |
|
| Q |
377 |
agttggtggtggtaagccatattttcatcctttttattattttccttcttcacttcacaagtcatacacaatattttaccatattttagtaacaacattt |
476 |
Q |
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| T |
25953115 |
agttggtggtggtaagccatattttcatcctttttattattttccttcttcacttcacaagtcatacacaatattttaccatattttagtaacaacattt |
25953016 |
T |
|
| Q |
477 |
tatgatattttttcattacagaacataatgaatgtgaaactgatgctgattgtccaaaacatacgaccatattttttgttatgaagtg |
564 |
Q |
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| T |
25953015 |
tatgatattttttcattgcagaacataatgaatgtgaaactgatgctgattgtccaaaacatacgaccatattttttgttatgaagtg |
25952928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 30798923 - 30798976
Alignment:
| Q |
358 |
tatttcttatcgcaacaaaagttggtggtggtaagccatattttcatccttttt |
411 |
Q |
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| T |
30798923 |
tatttcttatcacatcagaagttggtggttgtaagccatattttcatccatttt |
30798976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 535
Target Start/End: Original strand, 30790500 - 30790603
Alignment:
| Q |
438 |
tcatacacaatattttaccatattttagtaacaacattttatgatattttttcattacagaacataatga------atgtgaaactgatgctgattgtcc |
531 |
Q |
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| T |
30790500 |
tcatacacaatcttttatcatgtttcagtaacattattttattatcttttttcattacagcacatactgatattccatgtgaacccgatgctgattgtcc |
30790599 |
T |
|
| Q |
532 |
aaaa |
535 |
Q |
| |
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|||| |
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| T |
30790600 |
aaaa |
30790603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 30805425 - 30805471
Alignment:
| Q |
360 |
tttcttatcgcaacaaaagttggtggtggtaagccatattttcatcc |
406 |
Q |
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| T |
30805425 |
tttcttatcgcatcagaagttggtggttgtaagccatgttttcatcc |
30805471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 535
Target Start/End: Complemental strand, 1681441 - 1681379
Alignment:
| Q |
473 |
attttatgatattttttcattacagaacataatgaatgtgaaactgatgctgattgtccaaaa |
535 |
Q |
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| T |
1681441 |
attttattatctcttttcattacagcacatattaaatgtgaaactgatgatgattgtccaaaa |
1681379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 6119860 - 6119905
Alignment:
| Q |
319 |
atatggatgaaattctcaagtttgttttttgtatgattatatttct |
364 |
Q |
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| T |
6119860 |
atatggctgaaattctcaagtttgtttgttttatgattatatttct |
6119905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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