View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12924_high_8 (Length: 506)
Name: NF12924_high_8
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Original strand, 24720633 - 24721119
Alignment:
| Q |
5 |
cagcacagacaacaatatcgtgaaagataaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcattt |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24720633 |
cagcacaaacaacaatatcgtgaaggataaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcattt |
24720732 |
T |
|
| Q |
105 |
ccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24720733 |
ccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaa |
24720832 |
T |
|
| Q |
205 |
gtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagctggaaaccctcaaggt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24720833 |
gtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagctggaaaccctcaaggt |
24720932 |
T |
|
| Q |
305 |
ctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactatcaatccctgaatgagg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24720933 |
ctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactatcaatccctgaatgagg |
24721032 |
T |
|
| Q |
405 |
aagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatgtagtttcttcaactctattgt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24721033 |
aagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatgtagtttcttcagctctattgt |
24721119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 33 - 491
Target Start/End: Original strand, 24729334 - 24729792
Alignment:
| Q |
33 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||| |
|
|
| T |
24729334 |
aaaatgtcggctcttgtttccggtttgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcttttccaaccgagctttttgatcgagtagaag |
24729433 |
T |
|
| Q |
133 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaagtacttttggccttaatgttgtccgatc |
232 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24729434 |
ctcttcaatatgcatgggctccttattataccattcacaaggtataagcaaaactatgttttcattatgcaagtatttttggccttaatgttatccgatc |
24729533 |
T |
|
| Q |
233 |
tcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagctggaaaccctcaaggtctgaaaatggttacatggatggtcgatt |
332 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
24729534 |
tcagttattcgattttgacagatcttggctggcctgttggatcaatatacaattggtggaaaccctcaagctctgaaaatggttacgtggatggttgatt |
24729633 |
T |
|
| Q |
333 |
acttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactatcaatccctgaatgaggaagctggaggaatgaatgatctccttta |
432 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24729634 |
acttttacaacagagtcatgaatgtaatacagaagctcactgtaaatggacattatcaatccctgaatgaggaagctggaggaatgaatgatgtccttta |
24729733 |
T |
|
| Q |
433 |
cagattatatagcttaacggtaggttaactagttcatgtagtttcttcaactctattgt |
491 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
24729734 |
cagattatatagcataacggtaggttaactagttcacgtagtttcttcaaatttattgt |
24729792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 470
Target Start/End: Original strand, 24689754 - 24690191
Alignment:
| Q |
33 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
132 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| | |||||||||||||| |||||| |
|
|
| T |
24689754 |
aaaatgtcggctcttgttgccggtctatccgcctgtcaagaaaaaattggaacaggatatctctctgcatttccgccagagttttttgatcggtttgaaa |
24689853 |
T |
|
| Q |
133 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaactagattttgattatgcaagtacttttggccttaatgttgtccgatc |
232 |
Q |
| |
|
|| || || || |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| | ||| |||| |
|
|
| T |
24689854 |
atattcaacctgtttgggctccctattacaccattcacaaggtataaccaaaactggattttgattatgcaagtgcttttggccttattactgtgtgatc |
24689953 |
T |
|
| Q |
233 |
tcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagctggaaaccctcaaggtctgaaaatggttacatggatggtcgatt |
332 |
Q |
| |
|
||| |||||| |||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
24689954 |
tcaattattcaactttgacagattttggccggcctgttggatcagtatactgtagctggaaaccctcaagctctaaaaatggtgacatggatggtcgatt |
24690053 |
T |
|
| Q |
333 |
acttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactatcaatccctgaatgaggaagctggaggaatgaatgatctccttta |
432 |
Q |
| |
|
|||||||| || ||||| ||||||| ||| |||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
24690054 |
acttttacgaccgagtggtgaatgttatatcgaagtacactgtaaacagacactatcaatcactgaatgaggaaactggaggaatgaatgatgtccttta |
24690153 |
T |
|
| Q |
433 |
cagattatatagcttaacggtaggttaactagttcatg |
470 |
Q |
| |
|
|| |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
24690154 |
caaattatacagcgtaacggtaggttagctagttcatg |
24690191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 24746901 - 24747055
Alignment:
| Q |
33 |
aaaatgtcggctcttgtttccggtctgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcatttccaaccgagttttttgatcgaattgaaa |
132 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
24746901 |
aaaatgttggctcttgttgccggtttgtctgcctgtcaggaaaaaattggaacgggatatatgtatgcgtttccaaccgaattttttaatcgaattgaag |
24747000 |
T |
|
| Q |
133 |
atcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaact |
187 |
Q |
| |
|
|||| |||| ||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
24747001 |
ctcttcaatacgcatgggctccttattataccattcacaaggtataagcaaaact |
24747055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 24740969 - 24741018
Alignment:
| Q |
432 |
acagattatatagcttaacggtaggttaactagttcatgtagtttcttca |
481 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
24740969 |
acagattatatagcttaacggtaggctaactagttactgtagtttcttca |
24741018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University