View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_high_9 (Length: 502)
Name: NF12924_high_9
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 241 - 484
Target Start/End: Complemental strand, 43008691 - 43008454
Alignment:
| Q |
241 |
cttcttcattgcttcttctactttagacaccataatgttcttttgaatgatttgaagaaaaatgaaacaaaattagaaatttaagatgctagctatagat |
340 |
Q |
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| T |
43008691 |
cttcttcattgcttcttctactttagacaccataatgttcttttgaatgatttgaagaacaatgaaacaaaattagaaatttaagatgctagctatagat |
43008592 |
T |
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| Q |
341 |
ggtattttgtgcttggatatccatacaactacaagtacttccccttttatagagttttgtaagtagagatctaaatgcaccttgttttctgccagttttc |
440 |
Q |
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| T |
43008591 |
ggtatgttgtgcttggatatccat------acaaggacttccccttttatagagttttgtaagtagagatctaaatgcaccttgttttctgccagttttc |
43008498 |
T |
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| Q |
441 |
acttagctattagatactccaattggcaattggtacaaggttag |
484 |
Q |
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| T |
43008497 |
acttagctattagatactccaattggcaattggtacaaggttag |
43008454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 43008923 - 43008778
Alignment:
| Q |
9 |
gagatgaagatgagctaggaaatgataattaattaaggaatgcattattgaattgtgagtgctatccataggaaggagcacaagctatgcaagctagaaa |
108 |
Q |
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| T |
43008923 |
gagatgaagatgagctaggaaatgataattaattaaggaatgcattattgaattgtgagtgctatccataggaaggagcacaagctatgcaagctagaaa |
43008824 |
T |
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| Q |
109 |
aagaatggcagaagaaagaccatcctcttccacattggaactactc |
154 |
Q |
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| T |
43008823 |
aagaattgcagaagaaagaccatcctcttccacattggaactactc |
43008778 |
T |
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