View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_1 (Length: 763)
Name: NF12924_low_1
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_1 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 11 - 763
Target Start/End: Original strand, 37914602 - 37915354
Alignment:
| Q |
11 |
catcatcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914602 |
catcatcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaa |
37914701 |
T |
|
| Q |
111 |
cgagaatccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcactt |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914702 |
cgagaatccctctcactttctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcactt |
37914801 |
T |
|
| Q |
211 |
cctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914802 |
cctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccat |
37914901 |
T |
|
| Q |
311 |
aacactcctccttacatacgttaccttgatcaagactctatctccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattcacaag |
410 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914902 |
aacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattcacaag |
37915001 |
T |
|
| Q |
411 |
atgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtacatgtattgttcctctcatggccattcaaatcaccat |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37915002 |
atgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtacatgtattgttcctctcatggccattcaaatcaccat |
37915101 |
T |
|
| Q |
511 |
tctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttcc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37915102 |
tctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttcc |
37915201 |
T |
|
| Q |
611 |
aaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttgatcttccttcccatgaaagagatagcgtacttaaacacccaacggctc |
710 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37915202 |
aaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttgatcttccttcccatgaaagagatagagtacttaaacacccaacggctc |
37915301 |
T |
|
| Q |
711 |
ctaaactcaactactttcaagaaatacaatattttgtattggaaatcatgaaa |
763 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915302 |
ctaaactcaactactttcaagaaatacaatattttgtattggaaatcatgaaa |
37915354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 37906446 - 37906894
Alignment:
| Q |
18 |
acgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaat |
117 |
Q |
| |
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|||||| ||||||| |||| ||| | ||||| || |||||||| ||||| || | ||| || |||||||||||| |||||||||||||||||| | | | |
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| T |
37906446 |
acgagaccaaattcaatcacaacaacacagttatgatgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacact |
37906545 |
T |
|
| Q |
118 |
ccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaa |
217 |
Q |
| |
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||||||||| ||||| |||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906546 |
ccctctcaccttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaa |
37906645 |
T |
|
| Q |
218 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906646 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactc |
37906745 |
T |
|
| Q |
318 |
ctccttacatacgttaccttgatcaagactctatctccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattcacaagatgctca |
417 |
Q |
| |
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|||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37906746 |
ctcctttcatacgttaccttgatgaagactctatttccttcactgtagctgaatcctcagcagacttcaacatcctcgtatctgattcacaagatgctca |
37906845 |
T |
|
| Q |
418 |
aaattggcaccctcttgttccaaatttacctccacctcgtactgaacaa |
466 |
Q |
| |
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||| ||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
37906846 |
aaactggcaccatctcgttccaaatttacctccacctcgtaccgaacaa |
37906894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 168 - 687
Target Start/End: Complemental strand, 37961472 - 37960950
Alignment:
| Q |
168 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
267 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
268 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatctccttcaccatagct |
367 |
Q |
| |
|
||| || || |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
37961372 |
cttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagct |
37961273 |
T |
|
| Q |
368 |
gaatcctcagcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaa |
467 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
37961272 |
gaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaag |
37961173 |
T |
|
| Q |
468 |
atggtacatgtattgttcctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacgg |
567 |
Q |
| |
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| || | || | ||| | ||||| |||||| ||||| |||| || ||||| ||||| ||||| || || | || || |||| ||||||||| |
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| T |
37961172 |
acaacactcgcatcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacgg |
37961073 |
T |
|
| Q |
568 |
aaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctat---aacaaacaacaacgagttgtctcttgaatactctccgcctcttgat |
664 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| | | |||| ||||| || || ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
37961072 |
aaaatcacttcaccatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctcttgaatactctccgcctcttgat |
37960973 |
T |
|
| Q |
665 |
cttccttcccatgaaagagatag |
687 |
Q |
| |
|
|||||||| |||||||||||||| |
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| T |
37960972 |
cttccttcacatgaaagagatag |
37960950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 658 - 750
Target Start/End: Original strand, 37907076 - 37907168
Alignment:
| Q |
658 |
tcttgatcttccttcccatgaaagagatagcgtacttaaacacccaacggctcctaaactcaactactttcaagaaatacaatattttgtatt |
750 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| | |||| ||||||||||||| |||||| |||||||||||| ||| |||||| |
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| T |
37907076 |
tcttgatcttccttcccatgaaaggcatagattacttaaagatccaaaggctcctaaactcgcctacttgcaagaaatacaagattatgtatt |
37907168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 37961584 - 37961526
Alignment:
| Q |
53 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaac |
111 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| |
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|
| T |
37961584 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaac |
37961526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 600
Target Start/End: Original strand, 37906982 - 37907030
Alignment:
| Q |
554 |
gttgttgcagacggaaaatc--acttcatcatttcatgaaattttgggc |
600 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37906982 |
gttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggc |
37907030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 165 - 687
Target Start/End: Original strand, 3782862 - 3783390
Alignment:
| Q |
165 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
|
| Q |
265 |
cttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatctccttcaccata |
364 |
Q |
| |
|
||||||||| | | | ||||| || || || ||| || ||||| | || ||| ||||| ||||| ||||| || ||||||| ||||||||||||| |
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| T |
3782962 |
cttctttccatactcttccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccatt |
3783061 |
T |
|
| Q |
365 |
gctgaatcctcagcagacttcaacatcctcatatctgattc---acaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactg |
461 |
Q |
| |
|
|||||||||| |||| |||||||| |||| || || ||||| |||||||| | |||||| ||||||| || |||| || || ||| | |||| ||||| |
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|
| T |
3783062 |
gctgaatccttagcaaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttttttccgaacttgccttctcctcatactg |
3783161 |
T |
|
| Q |
462 |
aacaaaatggtacatgtattgttcctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgc |
561 |
Q |
| |
|
|||| |||| ||| | | || ||||| |||||||||||| |||||||||||||||||||||| ||| |||| || ||| ||||||| ||| ||| | |
|
|
| T |
3783162 |
aacacaatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcagg |
3783261 |
T |
|
| Q |
562 |
agacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctctt |
661 |
Q |
| |
|
|| |||||||||||||| || ||||||||| | ||| ||| |||||||||| | | ||| | ||||||| || ||||| ||| |||||| ||||||| |
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|
| T |
3783262 |
tgatggaaaatcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctctt |
3783361 |
T |
|
| Q |
662 |
ga---tcttccttcccatgaaagagatag |
687 |
Q |
| |
|
|| ||||||||| |||||||||||||| |
|
|
| T |
3783362 |
gatcttcttccttcacatgaaagagatag |
3783390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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