View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12924_low_12 (Length: 502)
Name: NF12924_low_12
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 13135890 - 13136106
Alignment:
| Q |
7 |
gtgagatgaacaaatgactctgttaatttgggacggagtgagtatatatcacgacaagctttatccgagagtgttcagtgtatttacactttctctcttg |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13135890 |
gtgaaatgaacaaatgactctgttaatttgggacggagtgagtatatatcacgacaagctttatccgagagtg-------tatttacactttctctcttg |
13135982 |
T |
|
| Q |
107 |
tgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctgttatccacatcacttttgaaagttttgggaagtagatt |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13135983 |
tgttgacatttatttgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctattatccgcatcacttttgaaagttttgggaagtagatt |
13136082 |
T |
|
| Q |
207 |
gtcgct-gggaagcatgtttcttg |
229 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
13136083 |
gtcgctggggaagcatatttcttg |
13136106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 13136214 - 13136292
Alignment:
| Q |
332 |
atccgtctctatgtagacgacatcctccatttattttgagaaa-tagagatgattcttactcaaatcaattcagtcatt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
13136214 |
atccgtctctatgtagacgacatcctccatttatttttaaaaattagatatgattcttactcaaatcaattgagtcatt |
13136292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 17776688 - 17776618
Alignment:
| Q |
96 |
tttctctcttgtgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatc |
166 |
Q |
| |
|
||||||||| |||| |||||| ||| ||||| ||| ||||||||||| | || ||||||||||||||||| |
|
|
| T |
17776688 |
tttctctctcatgttaacatttctctctcctccatgtattgtgcaaaagcaagcattttaattggtcaatc |
17776618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 29108360 - 29108489
Alignment:
| Q |
85 |
tgtatttacactttctctcttgtgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctgttatccacatcacttt |
184 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||| ||||| ||||||||||||||| | | |||||| ||||||||||||||||||||| ||||| | |
|
|
| T |
29108360 |
tgtatttccactttctctctcttgttgatgtttatctctcctccatgcattgtgcaaaaccaaatattttgattggtcaatctgttatccacgtcactct |
29108459 |
T |
|
| Q |
185 |
tgaaagttttgggaagtagattgtcgctgg |
214 |
Q |
| |
|
||||||||| |||||| | ||||||||||| |
|
|
| T |
29108460 |
tgaaagtttcgggaaggaaattgtcgctgg |
29108489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 9155919 - 9156044
Alignment:
| Q |
83 |
agtgtatttacactttctctcttgtgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctgttatccacatcact |
182 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| | | |||||||||||||| || |||||||||| ||||| |
|
|
| T |
9155919 |
agtgtatttacactttctctctcccgttgacatttatctctcctctatgtattgtgcaaaaccaaatattttaattggtcgatatgttatccacgtcact |
9156018 |
T |
|
| Q |
183 |
tttgaaagttttgggaagtagattgt |
208 |
Q |
| |
|
|||||||||| | |||||| ||||| |
|
|
| T |
9156019 |
cttgaaagtttcgtgaagtaaattgt |
9156044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 26274741 - 26274867
Alignment:
| Q |
85 |
tgtatttacactttctctcttgtgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctgttatccacatcacttt |
184 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| || || ||| ||| ||||||| | ||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
26274741 |
tgtatttacattttctctctcctgttgacatttatctctcttccatgtattatgcaaaaccaagtattttaattggtcaatctgtgatccacgccactct |
26274840 |
T |
|
| Q |
185 |
tgaaagttttgggaagtagattgtcgc |
211 |
Q |
| |
|
| ||| |||||||||||| |||||||| |
|
|
| T |
26274841 |
taaaaattttgggaagtaaattgtcgc |
26274867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 7813899 - 7813816
Alignment:
| Q |
96 |
tttctctcttgtgttgacatttatctgtcctctatgcattgtgcaaaatcgagtattttaattggtcaatctgttatccacatc |
179 |
Q |
| |
|
||||||| || ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
7813899 |
tttctcttttctgttgacatttatctctcttctatgtattgtgcaaaatcaagtattttaattggtcaatctgtcatccacatc |
7813816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 8007789 - 8007829
Alignment:
| Q |
356 |
ctccatttattttgagaaatagagatgattcttactcaaat |
396 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
8007789 |
ctccatttattttgtcaaatggagatgattcttactcaaat |
8007829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University