View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12924_low_13 (Length: 474)
Name: NF12924_low_13
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_13 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 133 - 454
Target Start/End: Original strand, 11438686 - 11439007
Alignment:
| Q |
133 |
tatgtaagaagatgatatttgaattgaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatc |
232 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11438686 |
tatgtaacaagatgatatttgaattgaatttctccaaatctaaaaattaaatccatgtttaaccaatttctcttcaattacagtgtttaattgctcaatc |
11438785 |
T |
|
| Q |
233 |
atttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacct |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11438786 |
atttcagttgttagaagcttttctccatctccaacttggccacgacgaaaaaaagctttattttcaacaccaaatgacactttcccagtcttattaacct |
11438885 |
T |
|
| Q |
333 |
ccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagc |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11438886 |
ccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagc |
11438985 |
T |
|
| Q |
433 |
aagctttttcaaatgaaaatca |
454 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
11438986 |
aagctttttcaaatgaaaatca |
11439007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 158 - 452
Target Start/End: Original strand, 11317130 - 11317424
Alignment:
| Q |
158 |
gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc |
257 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| || |||||||||||| | ||||||| |||||||| |||||||||||| ||| | |||| | |
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| T |
11317130 |
gaatttcttaaaatctaaaaacacaacccatgttttacaaatttctcttcagcgatggtgtttatctgctcaaccatttcagttgtgagatgatttttcc |
11317229 |
T |
|
| Q |
258 |
catctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaact |
357 |
Q |
| |
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|||||||| | ||| |||| ||| ||||||||||||| | | || | ||||||| ||||||| |||||||| ||||| | |||||||||||| |
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| T |
11317230 |
aatctccaatattaccaagacggaaaaaagctttattttccatattaagaaaacctttcccgatcttattgacctccaaattgctcaacttctcaaaact |
11317329 |
T |
|
| Q |
358 |
acacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaat |
452 |
Q |
| |
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|||||||||||||||| |||||||||| ||||| ||||||| ||||| | ||| |||||||||||||| |||||||||| |||||||| ||||| |
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| T |
11317330 |
acacaaatttaatatatcatcaaccacacctttgaattcttcttctttggagaatggacactccaaaaactcagcaagctctttcaaataaaaat |
11317424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 185 - 451
Target Start/End: Complemental strand, 15461526 - 15461260
Alignment:
| Q |
185 |
ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat |
284 |
Q |
| |
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||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| ||| ||||| ||| | ||||||||||| ||||| ||| || |
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| T |
15461526 |
ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga |
15461427 |
T |
|
| Q |
285 |
aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac |
384 |
Q |
| |
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||||||||||||| | ||| | | | ||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
15461426 |
aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac |
15461327 |
T |
|
| Q |
385 |
ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaa |
451 |
Q |
| |
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|||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| |||| |
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| T |
15461326 |
tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaa |
15461260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 11438572 - 11438616
Alignment:
| Q |
28 |
gagagaaagtgcatgagataattcagatccctatattagatctac |
72 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11438572 |
gagagaaagtgcatgagataattcagatccccatattagatctac |
11438616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 451
Target Start/End: Original strand, 27498688 - 27498972
Alignment:
| Q |
167 |
aaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaa |
266 |
Q |
| |
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|||||||||||| | |||||||||||| ||||||| | ||| | | ||||||||| |||| ||||||||||| ||| ||||| |||| | |||||||| |
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| T |
27498688 |
aaaatctaaaaactcaacccatgtttacccaatttattttcggtgatagtgtttaattgcttaatcatttcagctgtgagaaggtttttccaatctccaa |
27498787 |
T |
|
| Q |
267 |
cttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatt |
366 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||| | | ||||| || |||||||||||||| | |||||||||||||||||||| |
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| T |
27498788 |
cttggccacgacgaaaaaaagctttattttcaacacctgttgctactcttacggtcttgttgacctccaagttgcttaagttctcaaaactacacaaatt |
27498887 |
T |
|
| Q |
367 |
taatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaa |
451 |
Q |
| |
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||||||| |||| | || || || |||||||| || ||| ||| ||||| ||| ||| ||||||| ||||||||||| |||| |
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| T |
27498888 |
taatatatcatcgatcatgcccttggattcttcttcattaaagaatggacaacccagaaactcagcaatctttttcaaataaaaa |
27498972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 158 - 445
Target Start/End: Complemental strand, 27505236 - 27504949
Alignment:
| Q |
158 |
gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc |
257 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| | ||||||||||| | || ||||||||||||||| ||||| |||||| ||||| |||| | |
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|
| T |
27505236 |
gaatttctcaaaatctaaaaactcaacccatgtttaccaaatttctcttcgacaactatgtttaactgctcaaccattttagttgtgagaagatttttcc |
27505137 |
T |
|
| Q |
258 |
catctccaacttggccacgacgaaaataagct-ttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaac |
356 |
Q |
| |
|
||||||||||| |||| |||| ||| ||| | || ||||||| | | || | |||||| ||||||| | |||||||||||||||||||||||||| |
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|
| T |
27505136 |
aatctccaactttgccaagacggaaa-aagttcttgttttcaatttccgacgaaattttcccgttcttattgatctccaagttgctaagcttctcaaaac |
27505038 |
T |
|
| Q |
357 |
tacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaa |
445 |
Q |
| |
|
||||||||| ||||||| |||||||||| || || |||||||| |||| | ||| |||||| ||||||| | ||||| || ||||||| |
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|
| T |
27505037 |
tacacaaatgtaatatatcatcaaccacaccattggattcttcttcttcggagaatggacaccccaaaaacttagcaatctctttcaaa |
27504949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 383
Target Start/End: Original strand, 27496478 - 27496647
Alignment:
| Q |
214 |
agtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacact |
313 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||| |||| | |||||||||||| |||||| | ||| |||||||||||||| ||||| |||| | | |
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|
| T |
27496478 |
agtgtttaacagctcaatcatttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttcatcaccagatgatatt |
27496577 |
T |
|
| Q |
314 |
ttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaacca |
383 |
Q |
| |
|
| | ||||||| || |||||||||| || ||||||||||||||||||||||||| | ||||||||| |
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|
| T |
27496578 |
cttcatgtcttatcgacttccaagttgcccagattctcaaaactacacaaatttaataaatcatcaacca |
27496647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 169 - 451
Target Start/End: Complemental strand, 27544678 - 27544396
Alignment:
| Q |
169 |
aatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaact |
268 |
Q |
| |
|
||||||||| | ||||||||| || ||||||| |||| | | |||||| ||||||||||||||||||||||| |||| |||| | |||||||||| |
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|
| T |
27544678 |
aatctaaaatctcaacccatgtgtagccaatttactttcagtgatagtgttcaactgctcaatcatttcagttgtgagaacatttttgcaatctccaact |
27544579 |
T |
|
| Q |
269 |
tggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaattta |
368 |
Q |
| |
|
|||| | || ||| | ||| ||||| | | |||| || | ||| || |||||||| |||||||||||||| || |||||||||||||| | ||||| |
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|
| T |
27544578 |
cggcctagccggaaaaagtatttgttttccatatcaaaagaaagttttcctgtcttattgacctccaagttgctcagtttctcaaaactacatagattta |
27544479 |
T |
|
| Q |
369 |
atataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaa |
451 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| ||||| | ||| ||||| ||||||| | ||||| || |||||||| |||| |
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|
| T |
27544478 |
atatatcatcaaccatacctttggattcttcttctttggagaatggacaacccaaaaaattagcaatctctttcaaataaaaa |
27544396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 185 - 451
Target Start/End: Original strand, 666 - 932
Alignment:
| Q |
185 |
ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat |
284 |
Q |
| |
|
||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| ||| ||||| ||| | ||||||||||| ||||| ||| || |
|
|
| T |
666 |
ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga |
765 |
T |
|
| Q |
285 |
aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac |
384 |
Q |
| |
|
||||||||||||| | ||| | | | ||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
766 |
aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac |
865 |
T |
|
| Q |
385 |
ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaa |
451 |
Q |
| |
|
|||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| |||| |
|
|
| T |
866 |
tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaa |
932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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