View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_14 (Length: 423)
Name: NF12924_low_14
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 41974975 - 41975344
Alignment:
| Q |
5 |
atgaatgaggagacagtttctcttcacctcgaaattgctcacttttctgaaaaatagtcagtcaaaagttatgacttgatcacattttacacacaaaaaa |
104 |
Q |
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| T |
41974975 |
atgaatgaggagacagtttttcttcacctcaaaattgctcacttttctaaaaaatagtcggttaaaagttatgacttgatcacattttacacacaaaaaa |
41975074 |
T |
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| Q |
105 |
taatcgatatggagttataacctgatcgagaacaaatttgaagtgtctaaagagaaattgacgaatgaggatgtgaattttcctcgatgagtccaaccat |
204 |
Q |
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| T |
41975075 |
taatcgatctggagttataccttgatcgagaacaaatttaaagtgtctaaagagaaattgacgaatgaggatgtaaattttcttcggtgagcccaaccat |
41975174 |
T |
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| Q |
205 |
tcttacatnnnnnnnnnncttggaactgtatacatttgtctcaattgtatggatcttaatatttttgtttttcaaactacaatgcaattacacctcttaa |
304 |
Q |
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|||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |
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| T |
41975175 |
tcttacat-aaatataaacttgggactctatacatttgtctcaattgtatggatctcaatatttttgtttttcaaactacaatgcaagtacacctcttga |
41975273 |
T |
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| Q |
305 |
aagtgttgcatcgacatgtcagacatattttgaacatcaacatgtatcagacacttggtgtttatttattt |
375 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41975274 |
aagtgttgtatcgacatgtcagatatattttgaacatcaacatgtatcagaaacttggtgtttatttattt |
41975344 |
T |
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