View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_15 (Length: 393)
Name: NF12924_low_15
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 52 - 384
Target Start/End: Original strand, 55144751 - 55145083
Alignment:
| Q |
52 |
taatgtcatacatacctatgtcatagattttattgaccaaatttaatgcaggtgcaaaagtaactctgtcatgtagtgacagcaatgggcaagtaacaat |
151 |
Q |
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| T |
55144751 |
taatgtcatacatacctatgtcatagattttattgaccaaatttaatgcaggtgcaaaagtaactctgtcatgtagtgacagcaatgggcaagtaacaat |
55144850 |
T |
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| Q |
152 |
gtcaagagaagaaacaacaaattggtttggaagctatacaatgaggtttgatggagcaccagacttaggtggttgttctgcacatgtctcaggaagtaat |
251 |
Q |
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| T |
55144851 |
gtcaagagaagaaacaacaaattggtttggaagctatacaatgaggtttgatggagcaccagacttaggtggttgttctgcacatgtctcaggaagtaat |
55144950 |
T |
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| Q |
252 |
aatatacaaggaggaccaatgagttgtggtgaaggtgctggtcctgcacaaaatccaagactcatgtttaggatgtttgacatggagatgtatgctgtgg |
351 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55144951 |
aatagacaaggaggaccaatgagttgtggtgaaggtgctggtcctgcacaaaatccaagactcatgtttaggatgtttgacatggagatgtatgctgtgg |
55145050 |
T |
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| Q |
352 |
atccactccttgctcagccttctcaacctatgc |
384 |
Q |
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| T |
55145051 |
atccactccttgctcagccttctcaacctatgc |
55145083 |
T |
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