View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_17 (Length: 366)
Name: NF12924_low_17
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 169 - 356
Target Start/End: Original strand, 23144875 - 23145062
Alignment:
| Q |
169 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttaatt |
268 |
Q |
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| T |
23144875 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttgatt |
23144974 |
T |
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| Q |
269 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
356 |
Q |
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| T |
23144975 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
23145062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 23144774 - 23144848
Alignment:
| Q |
101 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
175 |
Q |
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| T |
23144774 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
23144848 |
T |
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