View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_18 (Length: 355)
Name: NF12924_low_18
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 37914879 - 37915203
Alignment:
| Q |
12 |
tcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatctccttcaccatagctgaatcctcagcagacttcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914879 |
tcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagctgaatcctcagcagacttcaa |
37914978 |
T |
|
| Q |
112 |
catcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtacatgtattgttcct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914979 |
catcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtacatgtattgttcct |
37915078 |
T |
|
| Q |
212 |
ctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915079 |
ctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttca |
37915178 |
T |
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| Q |
312 |
tgaaattttgggcatttgtttccaa |
336 |
Q |
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||||||||||||||||||||||||| |
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| T |
37915179 |
tgaaattttgggcatttgtttccaa |
37915203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 37906716 - 37906894
Alignment:
| Q |
12 |
tcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatctccttcaccatagctgaatcctcagcagacttcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
37906716 |
tcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatttccttcactgtagctgaatcctcagcagacttcaa |
37906815 |
T |
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| Q |
112 |
catcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaa |
190 |
Q |
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| T |
37906816 |
catcctcgtatctgattcacaagatgctcaaaactggcaccatctcgttccaaatttacctccacctcgtaccgaacaa |
37906894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 37961352 - 37961040
Alignment:
| Q |
12 |
tcatcatccctccaaattcccataacactcctccttacatacgttaccttgatcaagactctatctccttcaccatagctgaatcctcagcagacttcaa |
111 |
Q |
| |
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||||| |||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37961352 |
tcatcgtccctccaaattcccaaaacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
37961253 |
T |
|
| Q |
112 |
catcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtacatgtattgttcct |
211 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| | || | || | ||| |
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| T |
37961252 |
tatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcatcatccct |
37961153 |
T |
|
| Q |
212 |
ctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttca |
311 |
Q |
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| ||||| |||||| ||||| |||| || ||||| ||||| ||||| || || | || || |||| ||||||||||||||||||||| |||||| |
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| T |
37961152 |
ataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttcaccatttcg |
37961053 |
T |
|
| Q |
312 |
tgaaattttgggc |
324 |
Q |
| |
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||||||||||||| |
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| T |
37961052 |
tgaaattttgggc |
37961040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 37906982 - 37907030
Alignment:
| Q |
278 |
gttgttgcagacggaaaatc--acttcatcatttcatgaaattttgggc |
324 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
37906982 |
gttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggc |
37907030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 336
Target Start/End: Original strand, 3783040 - 3783312
Alignment:
| Q |
67 |
agactctatctccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattc---acaagatgctcaaaattggcaccctcttgttcca |
163 |
Q |
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||||||| ||||||||||||| |||||||||| |||| |||||||| |||| || || ||||| |||||||| | |||||| ||||||| || |||| |
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| T |
3783040 |
agactctctctccttcaccattgctgaatccttagcaaacttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttttttccg |
3783139 |
T |
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| Q |
164 |
aatttacctccacctcgtactgaacaaaatggtacatgtattgttcctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtc |
263 |
Q |
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|| || ||| | |||| ||||||||| |||| ||| | | || ||||| |||||||||||| |||||||||||||||||||||| ||| |||| || | |
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| T |
3783140 |
aacttgccttctcctcatactgaacacaatgacacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcc |
3783239 |
T |
|
| Q |
264 |
tcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaa |
336 |
Q |
| |
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|| ||||||| ||| ||| | || |||||||||||||| || ||||||||| | ||| ||| ||||||||| |
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| T |
3783240 |
tcacgtttaaccacattgcaggtgatggaaaatcacttcaccaattcatgaaactctggtcatatgtttccaa |
3783312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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