View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12924_low_22 (Length: 303)

Name: NF12924_low_22
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12924_low_22
NF12924_low_22
[»] chr2 (9 HSPs)
chr2 (21-286)||(6915277-6915542)
chr2 (68-166)||(10543505-10543603)
chr2 (68-166)||(10471307-10471405)
chr2 (68-166)||(28106207-28106305)
chr2 (68-148)||(27966389-27966469)
chr2 (68-166)||(10859023-10859121)
chr2 (85-147)||(9081351-9081413)
chr2 (21-62)||(10507349-10507390)
chr2 (75-139)||(10505487-10505551)
[»] chr7 (4 HSPs)
chr7 (68-166)||(15044800-15044898)
chr7 (163-253)||(15043971-15044061)
chr7 (24-66)||(15045570-15045612)
chr7 (251-286)||(15043819-15043854)
[»] chr5 (1 HSPs)
chr5 (68-166)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 6915277 - 6915542
Alignment:
Q  21 gcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915277 gcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtccgattg 6915376  T
Q  121 aagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttgga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6915377 aagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttgga 6915476  T
Q  221 gcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattt 286  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915477 gcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattt 6915542  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 148  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  85 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 147  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 10507390 - 10507349
Alignment:
Q  21 gcacggaaatttataccggtattcatgggtagtgctgtcaaa 62  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  10507390 gcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  75 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 139  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 15044061 - 15043971
Alignment:
Q  163 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaacatatctaag 253  Q
    ||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcagctaacatatttaag 15043971  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 15045612 - 15045570
Alignment:
Q  24 cggaaatttataccggtattcatgggtagtgctgtcaaaaaca 66  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  15045612 cggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 15043854 - 15043819
Alignment:
Q  251 aagagtttatgagggcgtcattcggaagggtgattt 286  Q
    |||| |||||||||||||||||||||||||||||||    
T  15043854 aagaatttatgagggcgtcattcggaagggtgattt 15043819  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  68 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 166  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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