View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_23 (Length: 299)
Name: NF12924_low_23
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34546308 - 34546013
Alignment:
| Q |
1 |
acaggaattactcaggtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtca |
100 |
Q |
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| T |
34546308 |
acaggaatgactcatgtgaaatgtcataagaagttcaagaaatgccttattagggcacaaaaagccgggaaagttggcttttctaaggagtgtccagtca |
34546209 |
T |
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| Q |
101 |
gtaccactgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaactttcatgaactgtaaaaacattctaactccct |
200 |
Q |
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| T |
34546208 |
gtaccactgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaactttcatgaactgtaaaaacattctaaccccct |
34546109 |
T |
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| Q |
201 |
tgatataggccatatccctattgttaaacttctcttgatttgagaatgttgatgttaatgatcctattgtgcttggtaattagttaacctatgatt |
296 |
Q |
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| T |
34546108 |
tgatataggccatatccccattgttaaacttctcttgatttgagaatgttgattttaatgatcctattgtgcttggtaattagttaacctatgatt |
34546013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 34549212 - 34548965
Alignment:
| Q |
1 |
acaggaattactcaggtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtca |
100 |
Q |
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| T |
34549212 |
acaggaatgactaatgtgaaatgtcataagaagttcaagaactgcctagttaaaaaacggaaagccgggaagtttggattttcaa--gagtgtcctgtta |
34549115 |
T |
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| Q |
101 |
gtaccactgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaactttcatgaactgtaaaaacattctaactccct |
200 |
Q |
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| T |
34549114 |
gtaccactgtgcctaccatgataagaggcatggacttggccatcttgttgcacgaattgggtgacaccattcgtgatctgtaaaaacattctaaccccct |
34549015 |
T |
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| Q |
201 |
tgatataggccatatccctattgttaaacttctcttgatttgagaatgtt |
250 |
Q |
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| T |
34549014 |
tgatacatgccatatcaccattattaaacttctattgatttgggaatgtt |
34548965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 34541221 - 34541073
Alignment:
| Q |
1 |
acaggaattactcaggtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtca |
100 |
Q |
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| T |
34541221 |
acaggagtgactcatgtgaaatgtcataaaaggttaaagaactgtttaattagggtacaaagagccgggaaggttggattttcaaaagagtgtccggtca |
34541122 |
T |
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| Q |
101 |
gtaccactgtgcctaccatgataagaggcatggacttagctatcatgtt |
149 |
Q |
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| T |
34541121 |
gtatcgcagcgcctaccatgatacgtggcatggacttggccatcatgtt |
34541073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 34553855 - 34553689
Alignment:
| Q |
2 |
caggaattactcaggtgaaatgtcataagaagttcaagaaatgccttattaggtcacaaaaagccgggaaagttggcttttcaaaagagtgtccagtcag |
101 |
Q |
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| T |
34553855 |
caggaatgactcatgtgaaatgccataagagattgaagaactgcctaataagggaacaaaaagccaacaaggttggattttcgaaagagtgtccggccaa |
34553756 |
T |
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| Q |
102 |
taccactgtgcctaccatgataagaggcatggacttagctatcatgttgagcgatttgggtgacaac |
168 |
Q |
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| T |
34553755 |
tgtcgccgtgcctaccatgataaaaggcatggacttggccatcttgttgagcgaattgggtggcaac |
34553689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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