View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_27 (Length: 261)
Name: NF12924_low_27
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 47253121 - 47252870
Alignment:
| Q |
1 |
agttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgac |
100 |
Q |
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| T |
47253121 |
agttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgac |
47253022 |
T |
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| Q |
101 |
aatctaaatcagaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacc |
200 |
Q |
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| T |
47253021 |
aatctgaatcagaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacc |
47252922 |
T |
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| Q |
201 |
tggatctctgtgcatatggttacttaattactcattttgttgggctatctct |
252 |
Q |
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| T |
47252921 |
tggatctctgtgcatatggttacttaattactcattttgtttggctatctct |
47252870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 47248282 - 47248227
Alignment:
| Q |
42 |
tgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagt |
97 |
Q |
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| T |
47248282 |
tgtggcaaacctgccttcatcgccagagataccaaatcattactttgaaaaagagt |
47248227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 47241874 - 47241780
Alignment:
| Q |
1 |
agttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
95 |
Q |
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| T |
47241874 |
agttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
47241780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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