View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12924_low_28 (Length: 255)

Name: NF12924_low_28
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12924_low_28
NF12924_low_28
[»] chr2 (16 HSPs)
chr2 (124-239)||(19505396-19505511)
chr2 (20-65)||(6591963-6592008)
chr2 (20-62)||(14378333-14378375)
chr2 (20-65)||(10580967-10581012)
chr2 (20-65)||(33093366-33093411)
chr2 (20-65)||(34225771-34225816)
chr2 (20-65)||(45148061-45148106)
chr2 (24-65)||(45372645-45372686)
chr2 (20-64)||(4766297-4766341)
chr2 (20-63)||(7743401-7743444)
chr2 (93-127)||(19505596-19505630)
chr2 (20-58)||(36360482-36360520)
chr2 (20-65)||(4536572-4536617)
chr2 (20-65)||(24775187-24775232)
chr2 (20-65)||(29795299-29795344)
chr2 (20-65)||(41984416-41984461)
[»] chr5 (21 HSPs)
chr5 (127-239)||(30424035-30424145)
chr5 (20-65)||(31557444-31557489)
chr5 (20-65)||(34171163-34171208)
chr5 (20-89)||(13066688-13066757)
chr5 (20-65)||(27810345-27810390)
chr5 (20-65)||(33585084-33585129)
chr5 (20-65)||(36660426-36660471)
chr5 (22-65)||(12167693-12167736)
chr5 (20-58)||(29653623-29653661)
chr5 (20-58)||(33822612-33822650)
chr5 (20-65)||(166758-166803)
chr5 (20-65)||(793715-793760)
chr5 (20-65)||(7388290-7388335)
chr5 (20-65)||(7731702-7731747)
chr5 (20-65)||(12992063-12992108)
chr5 (20-65)||(14980148-14980193)
chr5 (20-61)||(15400174-15400215)
chr5 (20-65)||(28316712-28316757)
chr5 (20-65)||(36296241-36296286)
chr5 (20-65)||(38982254-38982299)
chr5 (20-65)||(42329655-42329700)
[»] chr8 (21 HSPs)
chr8 (20-65)||(11336117-11336162)
chr8 (20-65)||(1774169-1774214)
chr8 (20-65)||(42946120-42946165)
chr8 (20-62)||(8382587-8382629)
chr8 (20-61)||(5044337-5044378)
chr8 (20-65)||(11257540-11257585)
chr8 (20-65)||(29931341-29931386)
chr8 (20-65)||(35052469-35052514)
chr8 (20-65)||(36915365-36915410)
chr8 (20-65)||(38329139-38329184)
chr8 (21-65)||(7612496-7612540)
chr8 (20-63)||(3095613-3095656)
chr8 (20-58)||(13108993-13109031)
chr8 (20-58)||(16208955-16208993)
chr8 (31-65)||(32271507-32271541)
chr8 (20-65)||(5588583-5588628)
chr8 (20-65)||(9022393-9022438)
chr8 (20-65)||(22601134-22601179)
chr8 (20-65)||(32061533-32061578)
chr8 (21-58)||(34168316-34168353)
chr8 (20-64)||(30788934-30788978)
[»] chr7 (20 HSPs)
chr7 (20-65)||(31416861-31416906)
chr7 (23-62)||(30833206-30833245)
chr7 (20-65)||(3681032-3681077)
chr7 (20-65)||(18886668-18886713)
chr7 (20-65)||(28044241-28044286)
chr7 (20-65)||(36447711-36447756)
chr7 (20-62)||(26527506-26527548)
chr7 (20-65)||(1103483-1103528)
chr7 (20-65)||(18733452-18733497)
chr7 (20-65)||(22597229-22597274)
chr7 (20-65)||(36447180-36447225)
chr7 (20-65)||(40298846-40298891)
chr7 (20-65)||(42259657-42259702)
chr7 (20-58)||(5723009-5723047)
chr7 (20-62)||(19920381-19920423)
chr7 (20-58)||(39117598-39117636)
chr7 (20-65)||(17869236-17869281)
chr7 (20-65)||(30514972-30515017)
chr7 (20-65)||(36836058-36836103)
chr7 (20-65)||(43813454-43813499)
[»] chr6 (15 HSPs)
chr6 (20-65)||(1924773-1924818)
chr6 (20-65)||(34576542-34576587)
chr6 (19-65)||(17345244-17345290)
chr6 (20-65)||(4132084-4132129)
chr6 (20-65)||(6143082-6143127)
chr6 (20-65)||(32258720-32258765)
chr6 (20-58)||(3015921-3015959)
chr6 (23-65)||(34439525-34439567)
chr6 (20-65)||(4123964-4124009)
chr6 (20-65)||(10494871-10494916)
chr6 (20-65)||(12828790-12828835)
chr6 (20-65)||(29915539-29915584)
chr6 (20-65)||(29927205-29927250)
chr6 (20-65)||(30626867-30626912)
chr6 (20-65)||(31275751-31275796)
[»] chr3 (30 HSPs)
chr3 (20-65)||(34059875-34059920)
chr3 (20-64)||(38457460-38457504)
chr3 (20-65)||(83295-83340)
chr3 (21-65)||(19552539-19552583)
chr3 (20-62)||(1341029-1341071)
chr3 (20-62)||(45095555-45095597)
chr3 (20-65)||(647701-647745)
chr3 (20-65)||(2568112-2568157)
chr3 (20-65)||(3000751-3000796)
chr3 (20-65)||(26965608-26965653)
chr3 (20-65)||(32304014-32304059)
chr3 (20-65)||(36771676-36771721)
chr3 (20-65)||(43169333-43169378)
chr3 (20-65)||(46363120-46363165)
chr3 (20-65)||(49470788-49470833)
chr3 (20-65)||(52202400-52202445)
chr3 (22-65)||(44648512-44648555)
chr3 (20-58)||(25722570-25722608)
chr3 (20-65)||(4391903-4391948)
chr3 (20-65)||(13485914-13485959)
chr3 (20-65)||(22730924-22730969)
chr3 (20-65)||(25061703-25061748)
chr3 (20-65)||(31291073-31291118)
chr3 (20-65)||(37225704-37225749)
chr3 (21-62)||(42007171-42007212)
chr3 (20-65)||(43580474-43580519)
chr3 (20-65)||(50420258-50420303)
chr3 (20-64)||(27483293-27483337)
chr3 (22-58)||(36541497-36541533)
chr3 (20-64)||(53716029-53716073)
[»] chr4 (24 HSPs)
chr4 (20-65)||(31941553-31941598)
chr4 (20-65)||(37445655-37445700)
chr4 (20-65)||(47321139-47321184)
chr4 (20-63)||(55126494-55126537)
chr4 (20-62)||(45520569-45520611)
chr4 (20-65)||(21045151-21045196)
chr4 (20-65)||(35928486-35928531)
chr4 (20-65)||(50072276-50072321)
chr4 (20-65)||(52732594-52732639)
chr4 (20-58)||(45903517-45903555)
chr4 (20-62)||(54512030-54512072)
chr4 (20-65)||(1868210-1868255)
chr4 (20-65)||(6232146-6232191)
chr4 (20-65)||(15501257-15501302)
chr4 (20-65)||(19282522-19282567)
chr4 (20-65)||(19849079-19849124)
chr4 (20-65)||(29840070-29840115)
chr4 (20-65)||(34124290-34124335)
chr4 (20-65)||(36805555-36805600)
chr4 (20-65)||(38692409-38692454)
chr4 (20-65)||(39671193-39671238)
chr4 (20-65)||(54091953-54091998)
chr4 (20-65)||(56556365-56556410)
chr4 (20-56)||(30492732-30492768)
[»] chr1 (18 HSPs)
chr1 (20-65)||(9552439-9552484)
chr1 (20-65)||(12002244-12002289)
chr1 (20-65)||(84603-84648)
chr1 (20-65)||(11650056-11650101)
chr1 (20-65)||(24041110-24041155)
chr1 (20-58)||(17919929-17919967)
chr1 (20-58)||(40061006-40061044)
chr1 (20-58)||(50158416-50158454)
chr1 (20-65)||(5317686-5317731)
chr1 (20-65)||(6332164-6332209)
chr1 (20-65)||(15698860-15698905)
chr1 (20-65)||(38132277-38132322)
chr1 (24-65)||(43738367-43738408)
chr1 (20-65)||(44583770-44583815)
chr1 (20-65)||(48259963-48260008)
chr1 (20-60)||(2245789-2245829)
chr1 (20-64)||(11134570-11134614)
chr1 (22-62)||(43105692-43105732)
[»] scaffold0194 (1 HSPs)
scaffold0194 (20-65)||(8156-8201)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-65)||(70564-70609)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-65)||(321724-321769)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 19505511 - 19505396
Alignment:
Q  124 tacagcaaactgtcagttttgctactatctactaattggtttgcataaatttgtcattgtttgattgatttattaaaacccgtggggtaacaaattgcat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19505511 tacagcaaactgtcagttttgctactatctactaattggtttgcataaatttgtcattgtttgattgatttattaaaacccgtggggtaacaaattgcat 19505412  T
Q  224 gtacaaacgctttcat 239  Q
    ||||||||||||||||    
T  19505411 gtacaaacgctttcat 19505396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6592008 - 6591963
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6592008 attaaagttgtattggaaatgtaaaatgatattcattttaaaacaa 6591963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 14378333 - 14378375
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  14378333 attaaagttgtattgaaaatgtaaagtgacattcattttaaaa 14378375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 10580967 - 10581012
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||    
T  10580967 attaaagttgtattgaaaatataaagtgatattcattttgaaacaa 10581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 33093411 - 33093366
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  33093411 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 33093366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34225816 - 34225771
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  34225816 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 34225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 45148061 - 45148106
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  45148061 attaaagttttattgaaaatgtaaagtgacattcattttaaaacaa 45148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 45372645 - 45372686
Alignment:
Q  24 aagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  45372645 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 45372686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 4766297 - 4766341
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||    
T  4766297 attaaagttgtattgaaaatgtaaattgacattcattttgaaaca 4766341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 7743444 - 7743401
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaac 63  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||    
T  7743444 attaaagttgtattggaaatgtaaagtgacattcattttaaaac 7743401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 19505630 - 19505596
Alignment:
Q  93 gtagattagcttactccttttagaatgaaattaca 127  Q
    |||||||||||||||||||||| ||||||||||||    
T  19505630 gtagattagcttactccttttacaatgaaattaca 19505596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 36360482 - 36360520
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  36360482 attaaagttgtattgaaaatgcaaagtgatattcatttt 36360520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4536617 - 4536572
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  4536617 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 4536572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 24775232 - 24775187
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||| |||||||||||||||||| ||| | ||||||||||||||    
T  24775232 attaaaattgtattgaaaatgtaaagtgacaatcattttaaaacaa 24775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 29795299 - 29795344
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  29795299 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29795344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 41984461 - 41984416
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||||||||  |||||| ||||| ||||||    
T  41984461 attaaagttgtattgaaaatgtaaagcgatatttattttgaaacaa 41984416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 30424145 - 30424035
Alignment:
Q  127 agcaaactgtcagttttgctactatctactaattggtttgcataaatttgtcattgtttgattgatttattaaaacccgtggggtaacaaattgcatgta 226  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||||| ||||  |||||||||||||||||||||||||| ||| ||||| |||| | ||||    
T  30424145 agcaaactgtcagttttgctactgtctactg-ttgttttgcataattttgaaattgtttgattgatttattaaaacccttggtgtaacgaatttcctgta 30424047  T
Q  227 caaacgctttcat 239  Q
     ||||||||||||    
T  30424046 -aaacgctttcat 30424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31557444 - 31557489
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  31557444 attaaagttgtattgaaaatgtaaaatgacattcattttgaaacaa 31557489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34171208 - 34171163
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34171208 attaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 34171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 13066757 - 13066688
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaannnnnnnagttaaagtgacactca 89  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||       |||||||||||||||||    
T  13066757 attaaagttgtattggaaatgtaaaatgacattcattttgaaacaatttttttagttaaagtgacactca 13066688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 27810390 - 27810345
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  27810390 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 27810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 33585084 - 33585129
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||    
T  33585084 attaaagttgtattgaaaatgtaaagtgacgttcattttaaaacaa 33585129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36660471 - 36660426
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  36660471 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36660426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 12167693 - 12167736
Alignment:
Q  22 taaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  12167693 taaagttgtattgaaaatgtagagtgacattcattttaaaacaa 12167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 29653623 - 29653661
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  29653623 attaaagttgtattggaaatgtaaaatgacattcatttt 29653661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 33822612 - 33822650
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  33822612 attaaagttgtattgaaaatgtaaagtgacattcatttt 33822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 166758 - 166803
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  166758 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 793715 - 793760
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  793715 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 793760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 7388290 - 7388335
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||| ||||||||||||| |||| ||| ||||||||||||||||    
T  7388290 attaaaattgtattgaaaatataaagtgacattcattttaaaacaa 7388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 7731702 - 7731747
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  7731702 attaaagttgttttgaaaatataaagtgacattcattttaaaacaa 7731747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12992108 - 12992063
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||  ||||||||||||| ||||||||| ||||||    
T  12992108 attaaagttgtattagaaatgtaaaatgacattcattttgaaacaa 12992063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 14980148 - 14980193
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  14980148 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 14980193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 15400215 - 15400174
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaa 61  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||    
T  15400215 attaaagttgtattggaaatgtaaagtgacattcattttaaa 15400174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28316757 - 28316712
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  28316757 attaaagttgtattgaaaatataaaatgacatttattttgaaacaa 28316712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36296241 - 36296286
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  36296241 attaaagttgtattggaaatggaaagcgatattcattttaaaacaa 36296286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38982254 - 38982299
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  38982254 attaaagttgtattggaaatataaagtgacattcattttaaaacaa 38982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 42329655 - 42329700
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  42329655 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 42329700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 11336117 - 11336162
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  11336117 attacagttgtattgaaaatgtaaaatgatattcattttaaaacaa 11336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 1774169 - 1774214
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1774169 attaaagttgtattgaaaatgtaaattgacattcattttaaaacaa 1774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 42946165 - 42946120
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
T  42946165 attaaagttgtattaaaaatgtaaaatgacattcattttaaaacaa 42946120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 8382587 - 8382629
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  8382587 attaaagttgtattgaaaatgtaaagtgacattcattttaaaa 8382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 5044337 - 5044378
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaa 61  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  5044337 attaaaattatattgaaaatgtaaaatgatattcattttaaa 5044378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 11257585 - 11257540
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  11257585 attaaagttgtattaaaaatgtaaagtgacattcattttaaaacaa 11257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 29931341 - 29931386
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  29931341 attaaagttgtattggaaatgtaaagtgatatttattttaaaacaa 29931386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 35052514 - 35052469
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||    
T  35052514 attaaagttgtattggaaatgtaaaacgacattcattttaaaacaa 35052469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36915410 - 36915365
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  36915410 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38329139 - 38329184
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||    
T  38329139 attaaagttgtattgaaaatataaagtgacattcattttaaaacaa 38329184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 7612540 - 7612496
Alignment:
Q  21 ttaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||    
T  7612540 ttaatgttgtattgaaaatgtaaagtgacattcattttaaaacaa 7612496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 3095613 - 3095656
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaac 63  Q
    ||||||||||||||||||||||||| | | ||||||||||||||    
T  3095613 attaaagttgtattgaaaatgtaaagtaacattcattttaaaac 3095656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 13109031 - 13108993
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  13109031 attaaagttgcattgaaaatgtaaaatgacattcatttt 13108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 16208993 - 16208955
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  16208993 attaaagttgtattgaaaatgtaaagtgacattcatttt 16208955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 32271541 - 32271507
Alignment:
Q  31 attgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  32271541 attgaaaatgtaaaaagatattcattttaaaacaa 32271507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 5588583 - 5588628
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  5588583 attaaagttgtattggaaatgtaaattgacattcagtttaaaacaa 5588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 9022438 - 9022393
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||| ||||| ||| ||||||||||||||||    
T  9022438 attaaagttgtattggaaacgtaaagtgacattcattttaaaacaa 9022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22601179 - 22601134
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  22601179 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 22601134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 32061533 - 32061578
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  32061533 attaaatttgtatagaaaatgtaaagtgacattcattttaaaacaa 32061578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 34168316 - 34168353
Alignment:
Q  21 ttaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  34168316 ttaaagttgtattgaaaatgtaaagtgacattcatttt 34168353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 30788978 - 30788934
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||||||    
T  30788978 attaaagttgtattgaatatgtaaagtgacatttattttaaaaca 30788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31416861 - 31416906
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31416861 attaaagttgtattgaaaatgtaaagtgatattcattttaaaacaa 31416906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 30833206 - 30833245
Alignment:
Q  23 aaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30833206 aaagttgtattgaaaatgtaaaatgatattcattttaaaa 30833245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 3681032 - 3681077
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  3681032 attaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 3681077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 18886713 - 18886668
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  18886713 attaaagttgtattgaaaatgtaaagtgagattcattttaaaacaa 18886668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 28044241 - 28044286
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  28044241 attaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 28044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36447711 - 36447756
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  36447711 attaaagttgtattgaaaatataaagtgatattcattttaaaacaa 36447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 26527506 - 26527548
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  26527506 attaaagttgtattgaaaatgtaaaataacattcattttaaaa 26527548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 1103528 - 1103483
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  1103528 attaaagttgtattggaaatgtaaaatgacattcattttgaaacaa 1103483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 18733497 - 18733452
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  18733497 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 18733452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22597274 - 22597229
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  22597274 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 22597229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36447180 - 36447225
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||||    
T  36447180 attaaaattgtattgaaaatgtaaaatgacattcattttgaaacaa 36447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 40298891 - 40298846
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  40298891 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 40298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 42259657 - 42259702
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||    
T  42259657 attaaagttgtattgaaaacgtaaaataacattcattttaaaacaa 42259702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 5723047 - 5723009
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  5723047 attaaagttgtattgaaaatgtaaagtgacattcatttt 5723009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 19920381 - 19920423
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||    
T  19920381 attaaagttgtattggaaatgtaaagtgacattcattttaaaa 19920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 39117598 - 39117636
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    |||||||||||||||||||||||||| || |||||||||    
T  39117598 attaaagttgtattgaaaatgtaaaacgacattcatttt 39117636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 17869281 - 17869236
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  17869281 attaaagttgcattggaaatgtaaaatgacattcattttgaaacaa 17869236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 30515017 - 30514972
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  30515017 attaaagttgtattggaaatgtaaattgacattcattttgaaacaa 30514972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36836103 - 36836058
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||    
T  36836103 attaaagttgtattgaaaatgtaaagcgacattcattttgaaacaa 36836058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 43813454 - 43813499
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  43813454 attaaagttgtattggaaatataaagtgacattcattttaaaacaa 43813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 1924773 - 1924818
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1924773 attaaagttgtattgaaaatgtaaaatgacattcattttaaaacaa 1924818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34576587 - 34576542
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  34576587 attaaagttgtattggaaatgtaaaatgatattcattttaaaacaa 34576542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 17345244 - 17345290
Alignment:
Q  19 tattaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  17345244 tattaaagttgtattagaaatgtaaagtgatattcattttaaaacaa 17345290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 4132084 - 4132129
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  4132084 attaaagttgtattaaaaatgtaaagtgacattcattttaaaacaa 4132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6143127 - 6143082
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||||    
T  6143127 attaaagttgaattggaaatgtaaaatgacattcattttaaaacaa 6143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 32258765 - 32258720
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  32258765 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 32258720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 3015959 - 3015921
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  3015959 attaaagttgtattgaaaatgtaaagtgacattcatttt 3015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 34439525 - 34439567
Alignment:
Q  23 aaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||    
T  34439525 aaagttgtattggaaatgtaaaatgacattcattttgaaacaa 34439567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 4123964 - 4124009
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||| ||| ||||||||| ||||||    
T  4123964 attaaagttgtattaaaaatgtaaagtgacattcattttgaaacaa 4124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 10494871 - 10494916
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| |||| ||||||||| ||| ||||||||||||||||    
T  10494871 attaaagttgaattggaaatgtaaactgacattcattttaaaacaa 10494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 12828790 - 12828835
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  12828790 attaaagttgtattggaaatgtaaagtgaaattcattttgaaacaa 12828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29915584 - 29915539
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  29915584 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29915539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29927250 - 29927205
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  29927250 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29927205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 30626912 - 30626867
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||    
T  30626912 attaaagttgtattgaaaatgtaaagtaatatttattttgaaacaa 30626867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31275751 - 31275796
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  31275751 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 31275796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34059920 - 34059875
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  34059920 attaaagttgtattgaaaatgtaaaatgacattcattttaaaacaa 34059875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38457504 - 38457460
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  38457504 attaaagttgtattgaaaatgtaaaatgatattcattttgaaaca 38457460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 83340 - 83295
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  83340 attaaagttgtattgaaaatgtaaaatgacattcattttgaaacaa 83295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 19552583 - 19552539
Alignment:
Q  21 ttaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  19552583 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 19552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 1341029 - 1341071
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  1341029 attaaagttgtattgaaaatgtaaagtgacattcattttaaaa 1341071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 45095597 - 45095555
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  45095597 attaaagttgtattgaaaatgtaaagtgacattcattttaaaa 45095555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 647701 - 647745
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  647701 attaaagttgtattgaaaatgtaaaatgata-tcatttttaaacaa 647745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 2568112 - 2568157
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||    
T  2568112 attaaagttgtattgaaaatgtaaagtaacattcattttaaaacaa 2568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 3000796 - 3000751
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||    
T  3000796 attaaagttgtattgaaaatgtaaagtaacattcattttaaaacaa 3000751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 26965608 - 26965653
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  26965608 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 26965653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 32304014 - 32304059
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||    
T  32304014 attaaagttgtattgaaaatgtaaagtgacattcatttcaaaacaa 32304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36771676 - 36771721
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  36771676 attaaagttgtattgtaaatgtaaagtgacattcattttaaaacaa 36771721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 43169378 - 43169333
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  43169378 attaaagttgtattggaaatgtaaaatgacattcattttgaaacaa 43169333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 46363120 - 46363165
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  46363120 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 46363165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 49470833 - 49470788
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||    
T  49470833 attaaagttgtattgaaaatgtaaaacgacattcattttgaaacaa 49470788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 52202400 - 52202445
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||    
T  52202400 attaaagttgtattgaaaatgcaaaacgacattcattttaaaacaa 52202445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 44648512 - 44648555
Alignment:
Q  22 taaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||    
T  44648512 taaagttgtattggaaatgtaaagtgacattcattttaaaacaa 44648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 25722570 - 25722608
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  25722570 attaaagttgtattgaaaatgtaaagtgacattcatttt 25722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4391948 - 4391903
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  4391948 attaaaattgtactaaaaatgtaaagtgatattcattttaaaacaa 4391903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 13485914 - 13485959
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  13485914 attaaagttgtattggaaatgtaaattgacattcattttgaaacaa 13485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22730969 - 22730924
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  22730969 attaaagttgtattggaaatgtaaattgacattcagtttaaaacaa 22730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 25061748 - 25061703
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||    
T  25061748 attaaagttgtattggaaatgtaaagtggcattcattttaaaacaa 25061703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31291073 - 31291118
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||  ||||||||| ||||||||||||||| ||||    
T  31291073 attaaagttgtattagaaatgtaaagtgatattcattttaagacaa 31291118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 37225704 - 37225749
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  37225704 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 37225749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 42007171 - 42007212
Alignment:
Q  21 ttaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||| ||||||||||||||||||| || |||||||||||||    
T  42007171 ttaaaattgtattgaaaatgtaaaacgacattcattttaaaa 42007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 43580519 - 43580474
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||| ||||| ||||||    
T  43580519 attaaagttgtattgaaaatgtaaagtgacatttattttgaaacaa 43580474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 50420303 - 50420258
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||||||| ||| ||||| ||||||    
T  50420303 attaaagttgtattaaaaatgtaaaatgacatttatttttaaacaa 50420258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 27483293 - 27483337
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    ||||||||||||||| ||||||||| ||| ||||||||| |||||    
T  27483293 attaaagttgtattggaaatgtaaagtgacattcattttgaaaca 27483337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 36541533 - 36541497
Alignment:
Q  22 taaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    |||||||||||||||||||||||| || |||||||||    
T  36541533 taaagttgtattgaaaatgtaaaacgacattcatttt 36541497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 53716073 - 53716029
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    ||||||||||||||| ||||||||| | | |||||||||||||||    
T  53716073 attaaagttgtattggaaatgtaaagtaacattcattttaaaaca 53716029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 31941598 - 31941553
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  31941598 attaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 31941553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 37445700 - 37445655
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
T  37445700 attaaagttgtattaaaaatgtaaaatgacattcattttaaaacaa 37445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 47321184 - 47321139
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  47321184 attaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 47321139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 55126537 - 55126494
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaac 63  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  55126537 attaaagttgtattgaaaatttaaaatgacattcattttaaaac 55126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 45520569 - 45520611
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  45520569 attaaagttgtattgaaaatgtaaagtgacattcattttaaaa 45520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 21045196 - 21045151
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  21045196 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 21045151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 35928531 - 35928486
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  35928531 attaaagttgtattgaaaatgtaaagtgatatttattttgaaacaa 35928486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 50072321 - 50072276
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  50072321 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 50072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 52732639 - 52732594
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  52732639 attaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 52732594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 45903517 - 45903555
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  45903517 attaaagttgtattgaaaatgtaaagtgacattcatttt 45903555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 54512072 - 54512030
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||| |||| |||||||||| |||||||||||||||||    
T  54512072 attaaagttatattaaaaatgtaaagtgatattcattttaaaa 54512030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 1868210 - 1868255
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  1868210 attaaagttgcattgaaaatgtaaagtgacattcattttgaaacaa 1868255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 6232146 - 6232191
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||| ||||| ||||||    
T  6232146 attaaagttgtattgaaaatgtaaattgacatttattttgaaacaa 6232191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 15501257 - 15501302
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  15501257 attaaagttgtattggaaatgtaaagtgacattcattttcaaacaa 15501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 19282522 - 19282567
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  19282522 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 19282567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 19849124 - 19849079
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| || |||||| ||| ||||||||||||||||    
T  19849124 attaaagttgtattggaattgtaaagtgaaattcattttaaaacaa 19849079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29840115 - 29840070
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  29840115 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29840070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34124335 - 34124290
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| ||||||||||||||  || ||||||||||||||||    
T  34124335 attaaagttgcattgaaaatgtaaagcgacattcattttaaaacaa 34124290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36805555 - 36805600
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||| | || |||||||||||||    
T  36805555 attaaagttgtattgcaaatgtaaaataacatacattttaaaacaa 36805600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 38692454 - 38692409
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||  |||||||||||||| ||| ||||||||||||||||    
T  38692454 attaaagtttaattgaaaatgtaaagtgacattcattttaaaacaa 38692409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 39671193 - 39671238
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||||||||| || ||||||||| ||||||    
T  39671193 attaaagttgtattggaaatgtaaaacgacattcattttgaaacaa 39671238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 54091998 - 54091953
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||||    
T  54091998 attaaagttgtattaaaaatctaaattgacattcattttaaaacaa 54091953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 56556365 - 56556410
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  56556365 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 56556410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 30492768 - 30492732
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatt 56  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  30492768 attaaagttgtattgaaaatgtaaagtgacattcatt 30492732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 9552439 - 9552484
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  9552439 attaaagttgtattggaaatgtaaaatgacattcattttaaaacaa 9552484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12002289 - 12002244
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  12002289 attaaagttgtattggaaatgtaaaatgacattcattttaaaacaa 12002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 84603 - 84648
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  84603 attaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 84648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 11650101 - 11650056
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  11650101 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 11650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 24041110 - 24041155
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  24041110 attaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 24041155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 17919929 - 17919967
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  17919929 attaaagttgtattggaaatgtaaagtgatattcatttt 17919967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 40061006 - 40061044
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  40061006 attaaagttgtattgaaaatgtaaagtgacattcatttt 40061044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 50158416 - 50158454
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcatttt 58  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  50158416 attaaagttgtattgaaaatgtaaagtgacattcatttt 50158454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 5317686 - 5317731
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||| |||||| ||| ||||||||| ||||||    
T  5317686 attaaagttgtattgaaattgtaaagtgacattcattttgaaacaa 5317731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6332209 - 6332164
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||| || |||||||||| ||| ||||||||||||||||    
T  6332209 attaaagttgtgttaaaaatgtaaagtgacattcattttaaaacaa 6332164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 15698860 - 15698905
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  15698860 attaaagttgtattggaaatataaagtgacattcattttaaaacaa 15698905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38132277 - 38132322
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  38132277 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 38132322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 43738367 - 43738408
Alignment:
Q  24 aagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||||||| || ||| ||||||||||||||||    
T  43738367 aagttgtattgaaaatgtgaagtgacattcattttaaaacaa 43738408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 44583815 - 44583770
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||    
T  44583815 attaaagttgtattaaaaatgtaaggtgacattcattttaaaacaa 44583770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 48259963 - 48260008
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  48259963 attaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 48260008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 2245829 - 2245789
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaa 60  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  2245829 attaaagttgtattgaaaatgtaaggtgacattcattttaa 2245789  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 11134570 - 11134614
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaaca 64  Q
    |||||||||| |||||||||||||| ||| ||||||||| |||||    
T  11134570 attaaagttgcattgaaaatgtaaagtgacattcattttgaaaca 11134614  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 43105692 - 43105732
Alignment:
Q  22 taaagttgtattgaaaatgtaaaatgatattcattttaaaa 62  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  43105692 taaagttgtattgaaaatgtaaggtgacattcattttaaaa 43105732  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 8201 - 8156
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  8201 attaaagttgtattgaaaatgtaaattgacattcattttgaaacaa 8156  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 70564 - 70609
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    |||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  70564 attaaagttgcattgaaaatgtaaagtgacattcattttgaaacaa 70609  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 321769 - 321724
Alignment:
Q  20 attaaagttgtattgaaaatgtaaaatgatattcattttaaaacaa 65  Q
    ||||||||||||||| |||||||||  || ||||||||||||||||    
T  321769 attaaagttgtattggaaatgtaaagcgacattcattttaaaacaa 321724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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