View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_3 (Length: 720)
Name: NF12924_low_3
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 19 - 711
Target Start/End: Complemental strand, 40975362 - 40974664
Alignment:
| Q |
19 |
ctctgaccgatcgatccttcaagaaaacaaacataatagcatgtaggtgttgatcctccctatttccagtccaataatatttggccctgattccatgaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975362 |
ctctgaccgatcgatccttcaagaaaacaaacttaatagcatgtaggtgttgatcctccctatttccagtccaataatatttggccctgattccatgaaa |
40975263 |
T |
|
| Q |
119 |
gtgttgaaatacaaaagcctgcaaagtcaacgacatataattattagtacaaaaaacatgaatagacatgtnnnnnnntaggcaattcattattatttaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
40975262 |
gtgttgaaatacaaaagcctgcaaagtcaacgacatataagtattagtacaaaaaacaagaatagacatgtaaaaaaataggcaattcattattatttaa |
40975163 |
T |
|
| Q |
219 |
acatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagcaagggcagtcga-------t |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
40975162 |
acatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccactgttaagcttcttatacaggtaagcaagggcagtcgtcagtcggt |
40975063 |
T |
|
| Q |
312 |
ccccacacgtaatcggaaataaaaattaatatcatgttacatttaagttcaatttacataaataaaaataaccataaactccagtttacattnnnnnnnn |
411 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975062 |
ccccacacgtaatcagaaataaaaattaatatcatgttacatttaagttcaatttacataaataaaaataaccataaactccagtttacat-aaaaaaaa |
40974964 |
T |
|
| Q |
412 |
catagtacaaaaaagtttaagttgtagaaatttactactccttcagacatgcaataggccacatgaagttggtacttggtgagtaaatatacacttcatg |
511 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40974963 |
catagtacaaaaaagtttaagttgtagaaatttactactccttcagacatgcaataggccacatgaagttggtacttggtgagtaaatatacacttcatg |
40974864 |
T |
|
| Q |
512 |
tgggccaccgggatagtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgcattctccacctcttcctcctcctcc |
611 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40974863 |
tgggccaccggaatagtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgcattctccacctctgcctcctcctcc |
40974764 |
T |
|
| Q |
612 |
tccatatggtgcttctcgggctggggctcaggctcgttcacctgagatggttcagcaccatcaacacggcatcccccttcctctccctctccccctatgc |
711 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40974763 |
tccatatggtacttctcgggctggggctcaggctcgttcacctgagatggttcatcaccatcaacacggcatcccccttcctctccctctcctcctatgc |
40974664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 24141956 - 24142062
Alignment:
| Q |
200 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
299 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||||| ||||||| || | || ||||||||||||||||| |||||||| | | ||||||| |||| |
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| T |
24141956 |
gcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgtacaggtgagca |
24142055 |
T |
|
| Q |
300 |
agggcag |
306 |
Q |
| |
|
||||||| |
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|
| T |
24142056 |
agggcag |
24142062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 654
Target Start/End: Original strand, 24142906 - 24142959
Alignment:
| Q |
601 |
cctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
654 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
24142906 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct |
24142959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 9030673 - 9030540
Alignment:
| Q |
359 |
ttcaatttacataaataaaaataaccataaactccagtttacattnnnnnnnncatagtacaaaaaagtttaagttgtagaaatttactactccttcaga |
458 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || |||||||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||| |
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| T |
9030673 |
ttcagtttacataaataaaaataaacataaccttcagtttacat--aaaaaaacatagcacaaaaaagttaaagttgtaaaattttactactccatcaga |
9030576 |
T |
|
| Q |
459 |
catgcaataggccacatgaagttggtacttggtgag |
494 |
Q |
| |
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||||||||||||||||||||| ||||| | |||||| |
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| T |
9030575 |
catgcaataggccacatgaagatggtattgggtgag |
9030540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 654
Target Start/End: Complemental strand, 1771619 - 1771533
Alignment:
| Q |
570 |
tgctcatcatcatctgcattctccacctct--tcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
654 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||| ||||| |
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| T |
1771619 |
tgctcatcatcatatgtgttctccacctccactcctcctcctcctccatataatattgctcgggctggggctcaggctcgtacacct |
1771533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 20626437 - 20626309
Alignment:
| Q |
107 |
gattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataattattagtacaaaaaacatgaatagacatgtnnnnnnntaggcaattc |
206 |
Q |
| |
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|||||||| |||| ||||||| || || ||||| ||||||||| || ||||| |||||||| || ||||||||||| |||||| || ||||||| |
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| T |
20626437 |
gattccattaaagggttgaaaaaccaa-gcctggaaagtcaacaacctataagtattagtataagaaacatgaatatacatgtaaataaatatgcaattc |
20626339 |
T |
|
| Q |
207 |
attattatttaaacatataacaaggtcaag |
236 |
Q |
| |
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||||||||||| || | ||||| ||||||| |
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| T |
20626338 |
attattatttatacttgtaacagggtcaag |
20626309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 18418568 - 18418462
Alignment:
| Q |
200 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
299 |
Q |
| |
|
||||||||||||| |||| || | ||||||||||||| ||||||| |||| ||||||||||||||||| ||| |||| ||||||||| |||| |
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|
| T |
18418568 |
gcaattcattattttttatacctgcgacaaggtcaagtatccagccaatcgtaaagtcttataatgggctccattgttgagctctctatacaggtgagca |
18418469 |
T |
|
| Q |
300 |
agggcag |
306 |
Q |
| |
|
||||||| |
|
|
| T |
18418468 |
agggcag |
18418462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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