View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_34 (Length: 243)
Name: NF12924_low_34
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 34035969 - 34035847
Alignment:
| Q |
18 |
tttttatccgactcatttaaattttgaaattcattgtattttgccagcatacactctagaaaaacatacctcttattatttcacatccttttctagaagc |
117 |
Q |
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| T |
34035969 |
tttttatccgactcatttaaattttgaaattcattgtattttgccagcatacactctagaaaaacatacctcttattatttcacatccttttctagaagc |
34035870 |
T |
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| Q |
118 |
aacaatatatacatccctaactt |
140 |
Q |
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| T |
34035869 |
aacaatatatacatccctaactt |
34035847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 34035862 - 34035786
Alignment:
| Q |
156 |
tatacatccctaacttatcattggtaaactggttttgattattagttcgaatctcacttcaaaaaatatatattcat |
232 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34035862 |
tatacatccctaacttatcattggtgaactggttttgattattagttcgaatctcacttcaaaaaatatatattcat |
34035786 |
T |
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