View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_35 (Length: 239)
Name: NF12924_low_35
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 38467904 - 38468115
Alignment:
| Q |
10 |
aggagtagcataggatgatgaatataaaacaaatacggataactaaattcatgtgttgtatttatagaaatcaccggaaagcaannnnnnnagcatcagc |
109 |
Q |
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| T |
38467904 |
aggactagcataggatgatgaatataaaacaaatacggataactaaattcatgtgttgtatttatagaaatcaccggaaagcaatttttttagcatcagc |
38468003 |
T |
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| Q |
110 |
taagcagagagttatgcacatgcaaaataattgtctaattaacagtatttggtattatagagctcttgtcacacactaagaatcaggcaagcgttagatt |
209 |
Q |
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| T |
38468004 |
taagcagagagttatgcacatgcaaaataattgtttaattaacagtatttggtattatagagctcttgtcacacactaagaatcacgcaagcgttagatt |
38468103 |
T |
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| Q |
210 |
gttacatgtaaa |
221 |
Q |
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||| |||||||| |
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| T |
38468104 |
gttgcatgtaaa |
38468115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 38448365 - 38448415
Alignment:
| Q |
101 |
agcatcagctaagcagagagttatgcacatgcaaaataattgtctaattaa |
151 |
Q |
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| T |
38448365 |
agcatcagctaaggagagagttatacacatccaaaataagtgtctaattaa |
38448415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 38549906 - 38549856
Alignment:
| Q |
101 |
agcatcagctaagcagagagttatgcacatgcaaaataattgtctaattaa |
151 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| |||| |||||| |
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| T |
38549906 |
agcatcagctaagcagagagttatacacatccaaaataagtgtccaattaa |
38549856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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