View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_38 (Length: 234)
Name: NF12924_low_38
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47253424 - 47253644
Alignment:
| Q |
1 |
actccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcag |
100 |
Q |
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| T |
47253424 |
actccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcatagtctatcaagcttagctcag |
47253523 |
T |
|
| Q |
101 |
caagatagttacacagaaattccatttgtaattttgaagtctgaaaattgaaaattcaaaacaacaaatcagtaaacataatctgatatattaatgaact |
200 |
Q |
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| T |
47253524 |
caagatagttacacagaaattccatttgtaattttgaagtctgaaaattgaaaattcaaaacaacaaatcagtaaacataatctgatatattaatgaact |
47253623 |
T |
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| Q |
201 |
gttcaataaacatgtattaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47253624 |
gttcaataaacatgtattaat |
47253644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 47248610 - 47248730
Alignment:
| Q |
2 |
ctccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcagc |
101 |
Q |
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||||||| | ||| || ||||| |||||||||||||| ||||||||||| | |||||||||||| ||| |||| ||||| || | |||||||| ||||| |
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| T |
47248610 |
ctccaggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgtacactcatagtccaacaagcttaagtcagc |
47248709 |
T |
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| Q |
102 |
aagatagttacacagaaattc |
122 |
Q |
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||||||| | ||||| ||||| |
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| T |
47248710 |
aagatagctgcacaggaattc |
47248730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 47242182 - 47242309
Alignment:
| Q |
19 |
aatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcagcaagatagttacacagaa |
118 |
Q |
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|||||||||||||| |||||||| |||||||| || ||||||| |||||||||||||||||| || | || ||||| || |||||||| || |||||| |
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| T |
47242182 |
aatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggcttatatcggcaagataattgcacagat |
47242281 |
T |
|
| Q |
119 |
attccatttgtaattttgaagtctgaaa |
146 |
Q |
| |
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|||| | || || || ||||||||||| |
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| T |
47242282 |
attcaaactgcaaattggaagtctgaaa |
47242309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 47259345 - 47259254
Alignment:
| Q |
16 |
atgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcagcaagata |
107 |
Q |
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|||| |||||||||||||| |||||| || ||||||| |||||||||||| || | ||| |||||||| | || ||||||||||||||||| |
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| T |
47259345 |
atgattctagcaagaaatacaacagacgccgccaccaaagaaggcaagaagctcaaacaatcataatccaataaacttagctcagcaagata |
47259254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 47266941 - 47266835
Alignment:
| Q |
16 |
atgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcagcaagatagttacaca |
115 |
Q |
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|||||||||||||| ||| | | || ||||| |||| |||||||||||| || | ||| ||||||| | || |||||||||||||||||||||| | |
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| T |
47266941 |
atgaatctagcaagcaatgtgatcgacgcagcaaccaaagaaggcaagaacctcacacaagcataatccaataaacttagctcagcaagatagttactta |
47266842 |
T |
|
| Q |
116 |
gaaattc |
122 |
Q |
| |
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||||||| |
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| T |
47266841 |
gaaattc |
47266835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 5436351 - 5436272
Alignment:
| Q |
25 |
gcaagaaatataacagatgcagccaccatagaaggcaagaatcttatacattcataatctatcaagcttagctcagcaag |
104 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| | | ||| | |||||| | ||| || ||||||||||| |
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| T |
5436351 |
gcaagaaatacaactgatgcagccaccatagaaggcaagaatttcacacaattataatccaacaaactgagctcagcaag |
5436272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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