View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_4 (Length: 686)
Name: NF12924_low_4
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 669
Target Start/End: Original strand, 34546392 - 34547045
Alignment:
| Q |
16 |
atttcatttcaatgtggcatgtccatgtttacacgtagctagataatatcttttttgttcctcaatttcttctatgccatttgaaactttttagtttcca |
115 |
Q |
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| T |
34546392 |
atttcatttcaatgtggcatgtccatgtttacacgtagctagataatatcttttttgttcctcaatttcttctatgccatttgaaacttcttagtttcca |
34546491 |
T |
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| Q |
116 |
tattatattattatggtgttatacttatataaatgtgcatgtaaatgagataagataaacttaaaggacaccacagcaaacataaatcagatagcagcac |
215 |
Q |
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| T |
34546492 |
tattatattactatggtgttatacttctataaatgtgcatgtaaatgagataagataaacttaaaggacaccacagcaaacataaatcagatagcagcac |
34546591 |
T |
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| Q |
216 |
attttatccaagaacaaaaagtatatgacataacatttgagtgactcatctcaaaaattggattctcagcaatcaaatattccaccaatgacagaaaaaa |
315 |
Q |
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| T |
34546592 |
attttatccgagaacaaaaagtatatgacataacatttgagtgactcatctcaaaaattggattctcagcaatcagacattccaccaatgacagaaaaaa |
34546691 |
T |
|
| Q |
316 |
ctagcaaacaacaaaattgtaatgacagaacaccctatagcaaacaacaaaattctgataacatcaaaacaaaacaatcaataggctttaatttttagca |
415 |
Q |
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| T |
34546692 |
ctagcaaacaacaaaattgtaatgacagaacaccctatagcaaacaacaaaattctgataacatcaaaacaaaacaatcaataggctttaatttttagca |
34546791 |
T |
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| Q |
416 |
tctatggataaacaacaagaattagcttcctatttaaacaatttacagaattgaaatgaattgattcaacaaaaacaaaacacgtacacattcataacca |
515 |
Q |
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| T |
34546792 |
tctatggataaacaacaagaattagcttcctattcaaacaatttacagaattgaaatgaattgattcaacaaaaacaaaacacgtacacattcataacca |
34546891 |
T |
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| Q |
516 |
ctgattactaacttttttctatttaaaaaagctaacaaattaacaaaattaagaaaaagaacttaccgaatttgccaacacaatcgtcatgagccatgca |
615 |
Q |
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| T |
34546892 |
ctgattactaacttttttctatttaaaaaagcgaacaaattaacaaaattaagaaaaagaacttaccgaatttgccaacacaatcgtcatgagccatgca |
34546991 |
T |
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| Q |
616 |
acaagcatcaatatcatcacacggtttctcgcctggacaacccgaatagcctac |
669 |
Q |
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| T |
34546992 |
acaagcatcaatatcatcacacggtttctcgcctggacaacccgaatagcctac |
34547045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 561 - 659
Target Start/End: Original strand, 34549329 - 34549427
Alignment:
| Q |
561 |
aaattaagaaaaagaacttaccgaatttgccaacacaatcgtcatgagccatgcaacaagcatcaatatcatcacacggtttctcgcctggacaacccg |
659 |
Q |
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| T |
34549329 |
aaattaagaaaaagaatgtaccgaatttgccaacacaatcgtcatgagctatgcaacaagcatcaatatgatcacacggtttctcgtctggacaacccg |
34549427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 549 - 670
Target Start/End: Original strand, 34554983 - 34555104
Alignment:
| Q |
549 |
aacaaattaacaaaattaagaaaaagaacttaccgaatttgccaacacaatcgtcatgagccatgcaacaagcatcaatatcatcacacggtttctcgcc |
648 |
Q |
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| T |
34554983 |
aacaaaataataaaattaagagaaagaatgtaccgaatcgatcaacgcattcgtcatgacccatgcaacaagcatcaatatcatcacacggtttctcgcc |
34555082 |
T |
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| Q |
649 |
tggacaacccgaatagcctact |
670 |
Q |
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| T |
34555083 |
tggacaaccccaataacctact |
34555104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 579 - 663
Target Start/End: Original strand, 34541491 - 34541575
Alignment:
| Q |
579 |
taccgaatttgccaacacaatcgtcatgagccatgcaacaagcatcaatatcatcacacggtttctcgcctggacaacccgaata |
663 |
Q |
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| T |
34541491 |
taccgaatctgccaacgcaatcgtcatgacccatgcagcaagcatcgatatcatcacatggtttcacgcctggacaaccagaata |
34541575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 510
Target Start/End: Original strand, 34554684 - 34554770
Alignment:
| Q |
422 |
gataaacaacaagaattagcttcctatttaaacaatttacagaattgaaatgaattgattcaacaaaaacaaaacacgtacacattcat |
510 |
Q |
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| T |
34554684 |
gatacacaacaagaattagcttcc-acttgaacaatataca-aactgaactaaattgattcaacaaaaacaaaacacctacacaatcat |
34554770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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