View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12924_low_6 (Length: 582)
Name: NF12924_low_6
Description: NF12924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12924_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 28522511 - 28521966
Alignment:
| Q |
20 |
ccatctttatttacacccccaaataaaagtaacattaatctcatatatggataaagaaaatacaaagttaacatttcatgattatggttagttgtttatt |
119 |
Q |
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| T |
28522511 |
ccatctttatttacacccccaaataaaagtaacattaatctcatatatggataaagaaaatacaaagttaacatttcatgattatggttagttgtttatt |
28522412 |
T |
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| Q |
120 |
taccttaatggagtgagtagaggagataataatgctccttgatgtgtataaaagatgatttacaatttgcattttgctatggaacttatagaaatcctat |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28522411 |
taccttaatgaagtgagtagaggagataataatgctccttgatgtgtataaaagatgatttacaatttgcattttgctatggaacttatagaaatcccat |
28522312 |
T |
|
| Q |
220 |
gtctttcttgtttgaccattattcnnnnnnnnnnnaattgattcctttttacttactccatttgtcctaccttataaatgtattaggtctccctaaatat |
319 |
Q |
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| T |
28522311 |
gtctttcttgtttgaccattattctttttttttttaattgattcctttttacttactccatttgtcctaccttatgaatgtattaggtctccctaaatat |
28522212 |
T |
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| Q |
320 |
atttaaaaacgtgtgaatgatataaaagtacataaataattaattatgtcaacattcaacacttgtttattccttcaaacaaacaaaaaattgtaaatca |
419 |
Q |
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| T |
28522211 |
atttaaaaacgtgtgaatgatataaaagtacataaataattaattaggtcaacattcaacacttgtttattcctt----aaaaaaaaaaaatgtaaatca |
28522116 |
T |
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| Q |
420 |
cnnnnnnnnatagtcctcctattataattgagtcgacatcaatgtgtgatttatttttaaagtctttctttcaactcttattttcaagtaacttttagat |
519 |
Q |
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| T |
28522115 |
c--ttttttatagtcctcctattataattgtgtcgacatcaatacgtgctttatttttaaagtctttctttcaacttttattttcaagtaacttttagac |
28522018 |
T |
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| Q |
520 |
cataaaaaagtcagactaaacggtaccatagtcatgttttattagccttctt |
571 |
Q |
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| T |
28522017 |
cgtaataaagtcagactaaacggtaccatagtcatgttttattagccttctt |
28521966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 28456505 - 28456410
Alignment:
| Q |
41 |
aataaaagtaacattaatctcatatatggataaagaaaatacaaagttaacatttcatgattatggttagttgtttatttaccttaatggagtgag |
136 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
28456505 |
aataaaagtaacattaatctcatatttggatacagaaaatacaaagttaacatttgatgattatggttagttgtttatttaccttgatggagtgag |
28456410 |
T |
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