View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12925_high_1 (Length: 299)
Name: NF12925_high_1
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12925_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 38236395 - 38236662
Alignment:
| Q |
1 |
ttcccagatgcatcatttctttctttctgatgctgttgaagttgcaatatgcagatgttggatcagatttctcacttgttcatcttttgaagnnnnnnnn |
100 |
Q |
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| T |
38236395 |
ttcccagatgcatcatttctttctttctgatgctgttgaagttgcaatatccagatgttggatcagatttctcacttgttcatcttttgaagttttttct |
38236494 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnaagtactttagcgattaaattcacacaaattatatatagagaagtgagaaattaaaaattcaaatctcaaccgctacacataatat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38236495 |
ttctttcttgttttaagtactttagcgattagattcacacaaattatatttggagaagtgagaaattaaaaattcaaatctcaaccgctacaca------ |
38236588 |
T |
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| Q |
201 |
cttatagctacatttacgaaatatggaatacttgttgacttgttgttattgcaaaatacataaacaatttatgatcgtcatatt |
284 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38236589 |
--tatagctacatttatgaaatatggaat--------acttgttgttattgcaaaatacataaacaatttatgatcgtcatatt |
38236662 |
T |
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