View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12925_high_3 (Length: 397)
Name: NF12925_high_3
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12925_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 394
Target Start/End: Complemental strand, 38185633 - 38185262
Alignment:
| Q |
24 |
tcatcatttcatatgtgatctatttcaaacacgtgggacacatttgagtttccataaaataatgggcgttagaaaaaataatgttaaaaagataatatcc |
123 |
Q |
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| T |
38185633 |
tcatcatttcatatgtgatctatttcaaaaacgtgggacacatttgagtttccataaaataatgggcgttaaaaaaaataatgttaaaaaaataatatcc |
38185534 |
T |
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| Q |
124 |
aaatcacttctataccaccaattatacat-agtaccacatagagtttggtcacctcgaacgtcaccacagccaccacttatataagaacacttagctcgt |
222 |
Q |
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| T |
38185533 |
aaatcacttctataccaccaattatacatgagtatcacatagagtttggtcacctagaacgtcaccacggtcaccacttatataagaacacttagcttgt |
38185434 |
T |
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| Q |
223 |
gctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaat |
322 |
Q |
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| T |
38185433 |
gctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgcactccaat |
38185334 |
T |
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| Q |
323 |
tcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgcctta |
394 |
Q |
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| T |
38185333 |
tcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggcctta |
38185262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 219 - 397
Target Start/End: Complemental strand, 38180768 - 38180590
Alignment:
| Q |
219 |
tcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
318 |
Q |
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| T |
38180768 |
tcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
38180669 |
T |
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| Q |
319 |
caattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttacca |
397 |
Q |
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| T |
38180668 |
caattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttacca |
38180590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 226 - 394
Target Start/End: Complemental strand, 38170947 - 38170779
Alignment:
| Q |
226 |
attgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
325 |
Q |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
326 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgcctta |
394 |
Q |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgcctta |
38170779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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