View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12925_high_9 (Length: 322)
Name: NF12925_high_9
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12925_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 43065438 - 43065732
Alignment:
| Q |
1 |
tcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgtttaatcgcaa |
100 |
Q |
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| T |
43065438 |
tcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgtttaatcgcaa |
43065537 |
T |
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| Q |
101 |
ttctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcattttaacattac |
200 |
Q |
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| T |
43065538 |
ttctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcattttaacattac |
43065637 |
T |
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| Q |
201 |
catgccattattatattatcgtaatgnnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
297 |
Q |
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| T |
43065638 |
catgccattattatattatcgtaatg--ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 43047473 - 43047402
Alignment:
| Q |
4 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
75 |
Q |
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| T |
43047473 |
attcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
166 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
216 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
18 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
70 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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