View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12925_low_3 (Length: 274)

Name: NF12925_low_3
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12925_low_3
NF12925_low_3
[»] chr3 (4 HSPs)
chr3 (9-266)||(11897148-11897405)
chr3 (8-266)||(26432588-26432846)
chr3 (81-165)||(23424570-23424654)
chr3 (74-123)||(49149802-49149851)
[»] chr8 (3 HSPs)
chr8 (9-266)||(23132475-23132732)
chr8 (16-165)||(26587231-26587380)
chr8 (103-261)||(14760016-14760174)
[»] chr1 (4 HSPs)
chr1 (9-266)||(20284849-20285106)
chr1 (7-174)||(50236550-50236717)
chr1 (81-162)||(50451967-50452048)
chr1 (65-123)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (9-266)||(14653570-14653827)
chr2 (16-162)||(26791325-26791471)
chr2 (65-174)||(16322502-16322611)
chr2 (86-159)||(35135219-35135292)
chr2 (86-159)||(40328252-40328325)
chr2 (86-159)||(3779048-3779121)
chr2 (86-162)||(573266-573342)
chr2 (81-167)||(42403209-42403295)
chr2 (17-162)||(177504-177649)
chr2 (86-147)||(19265490-19265551)
chr2 (111-162)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (72-162)||(75967-76057)
[»] chr5 (3 HSPs)
chr5 (56-162)||(32874457-32874563)
chr5 (8-162)||(7817131-7817285)
chr5 (65-167)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (8-159)||(54477407-54477558)
chr4 (62-165)||(46784469-46784572)
chr4 (81-162)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (65-165)||(24990660-24990760)
chr6 (8-165)||(24893833-24893990)
chr6 (55-162)||(27852952-27853059)
chr6 (65-171)||(13599639-13599745)
[»] chr7 (4 HSPs)
chr7 (65-168)||(16769956-16770059)
chr7 (65-164)||(27781628-27781727)
chr7 (89-159)||(1353794-1353864)
chr7 (17-162)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  9 acatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  109 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  209 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  8 gacatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 107  Q
    ||||||| |||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  108 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacc 207  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || |||  |||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  208 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 266  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  81 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 165  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  74 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 123  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  9 acatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 108  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  109 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 208  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  209 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 266  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 26587231 - 26587380
Alignment:
Q  16 catcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaa 115  Q
    |||||| |||||||||||||||||  ||||  |||  | | | || ||||| || || ||||| ||||| || ||||||||| |||||||||||||||||    
T  26587231 catcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaa 26587330  T
Q  116 ggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 165  Q
    ||||| || ||||| || || || ||||| ||||| ||||| || |||||    
T  26587331 ggtgacccattgtctccctacctcttcattctttgtatggagaaactttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  103 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgg 202  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  203 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 261  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  9 acatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  109 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 208  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  209 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  7 ggacatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 106  Q
    |||||||| || ||| |||||||||||||| ||  | || || |  ||||||||  | ||||||||||||||| |||| |||||||||||| ||||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  107 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 174  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 50451967 - 50452048
Alignment:
Q  81 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451967 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 123  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  9 acatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 108  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  109 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 208  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  209 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 26791325 - 26791471
Alignment:
Q  16 catcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaa 115  Q
    ||||||||||||||||||||||||  ||||  | || | |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| | ||     
T  26791325 catcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcag 26791424  T
Q  116 ggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791425 ggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  165 cagctgctat 174  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 35135292 - 35135219
Alignment:
Q  86 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 159  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135292 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 40328252 - 40328325
Alignment:
Q  86 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 159  Q
    |||||||||||| ||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328252 cctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  86 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 159  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  86 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  81 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 167  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  17 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 116  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  117 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 19265490 - 19265551
Alignment:
Q  86 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 147  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  111 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

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Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  72 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  56 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 155  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  156 aaaagct 162  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  8 gacatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 107  Q
    |||||||  |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  108 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 6641110 - 6641008
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    |||||||| |||||  || | |||||||||||  |||||||||||||| ||||||||||| | || || || || |||||  | ||||||||||| ||||    
T  6641110 tggaacggaaacaaaatgtcccctttcaagcccactcatggcctccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaacttt 6641011  T
Q  165 cag 167  Q
    |||    
T  6641010 cag 6641008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  8 gacatcatcatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 107  Q
    ||||||| ||||||||||||||||||||| ||  | ||  | |  |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  108 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 159  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  62 ctttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 161  Q
    |||||||| || || || |||||||||||||| ||| ||||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  162 tttc 165  Q
    ||||    
T  46784472 tttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  81 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  165 c 165  Q
    |    
T  24990660 c 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  8 gacatcatcatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 106  Q
    ||||||| ||||||||||||||||||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  107 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 165  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  55 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 154  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||||||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  155 gaaaagct 162  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  165 cagctgc 171  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  165 cagc 168  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 27781727 - 27781628
Alignment:
Q  65 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 164  Q
    ||||||||||||||  |||| || || |||||  ||||||||||| |||||||||| ||  | || ||||| || |||||||| |||||||| |||||||    
T  27781727 tggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagcttt 27781628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 1353864 - 1353794
Alignment:
Q  89 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 159  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  1353864 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  17 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 116  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||  | ||||||||||| || ||  | ||| ||||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  117 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 162  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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