View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12925_low_4 (Length: 250)

Name: NF12925_low_4
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12925_low_4
NF12925_low_4
[»] chr8 (5 HSPs)
chr8 (1-231)||(23132702-23132932)
chr8 (64-231)||(14759722-14759889)
chr8 (64-231)||(26973253-26973420)
chr8 (1-231)||(26587024-26587254)
chr8 (159-231)||(38348267-38348339)
[»] chr3 (12 HSPs)
chr3 (1-231)||(11896948-11897178)
chr3 (4-231)||(26432818-26433045)
chr3 (4-218)||(23424311-23424525)
chr3 (7-227)||(11889865-11890085)
chr3 (4-231)||(17718481-17718708)
chr3 (4-231)||(19019710-19019937)
chr3 (4-231)||(38647305-38647532)
chr3 (4-218)||(53608423-53608637)
chr3 (146-227)||(49150035-49150116)
chr3 (91-231)||(15473656-15473795)
chr3 (160-230)||(3659894-3659964)
chr3 (162-231)||(55025080-55025149)
[»] chr1 (9 HSPs)
chr1 (1-231)||(20284649-20284879)
chr1 (8-231)||(31325079-31325302)
chr1 (4-231)||(50451695-50451922)
chr1 (4-231)||(50236688-50236915)
chr1 (4-231)||(43298158-43298385)
chr1 (1-223)||(10103800-10104022)
chr1 (146-231)||(1524767-1524852)
chr1 (145-231)||(23465137-23465224)
chr1 (4-56)||(5193219-5193271)
[»] chr2 (9 HSPs)
chr2 (1-231)||(14653797-14654027)
chr2 (4-231)||(35135342-35135569)
chr2 (4-231)||(40327975-40328202)
chr2 (4-231)||(19265213-19265440)
chr2 (5-218)||(573002-573215)
chr2 (64-231)||(16322246-16322413)
chr2 (82-231)||(177296-177445)
chr2 (64-231)||(42403400-42403567)
chr2 (160-230)||(39012328-39012398)
[»] chr5 (4 HSPs)
chr5 (4-231)||(7816932-7817159)
chr5 (146-218)||(23944828-23944900)
chr5 (4-231)||(6641139-6641366)
chr5 (147-231)||(23620887-23620971)
[»] chr4 (5 HSPs)
chr4 (4-231)||(54477530-54477758)
chr4 (4-231)||(3881512-3881742)
chr4 (146-218)||(33803788-33803860)
chr4 (147-231)||(48847971-48848055)
chr4 (147-231)||(46784742-46784826)
[»] chr6 (4 HSPs)
chr6 (4-231)||(11296925-11297152)
chr6 (4-218)||(24893962-24894176)
chr6 (18-231)||(35233286-35233499)
chr6 (4-231)||(32725587-32725814)
[»] scaffold0036 (1 HSPs)
scaffold0036 (4-231)||(75707-75932)
[»] chr7 (4 HSPs)
chr7 (1-218)||(23207989-23208206)
chr7 (7-227)||(27781759-27781979)
chr7 (150-231)||(16770233-16770314)
chr7 (147-231)||(1579428-1579512)
[»] scaffold0214 (1 HSPs)
scaffold0214 (154-231)||(8764-8841)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 23132702 - 23132932
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132702 acgcaatgcatgatgaacttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 23132801  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132802 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 23132901  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
    | |||||||||||||||||||||||||||||    
T  23132902 aagcagaaagctgctttgatagggaccaata 23132932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 14759889 - 14759722
Alignment:
Q  64 aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt 163  Q
    ||||| |||||||| || ||||| |||||||| |||| |||||  ||| |||||||  | ||||||||| |||| ||   | ||||||||||||| ||||    
T  14759889 aggaattcccagtttactttgtcaaaagctttttccaggtcaattttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt 14759790  T
Q  164 cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||| |||||||| | ||||||||| ||||||||||| |||||||| ||||| ||||||    
T  14759789 cctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgctttggtaggggccaata 14759722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 26973420 - 26973253
Alignment:
Q  64 aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt 163  Q
    ||||| |||||||| || ||||| |||||||| |||| |||||| ||| |||||||  | ||||||||| |||| ||   | ||||||||||||| ||||    
T  26973420 aggaattcccagtttactttgtcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattattt 26973321  T
Q  164 cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||| |||||||| |  |||||||| ||||||||||| |||||||| ||||| ||||||    
T  26973320 cctgcaaaacaatggagttatcagaggtgcccctcccaggcagaaaactgctttggtaggggccaata 26973253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26587254 - 26587024
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    ||||||||||||||||| ||||||| |  ||  |||||||| |||||||| || ||  |  | || || |||||||| || ||||| || |||||||| |    
T  26587254 acgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatgaagacaagtattaagaaactcccagttaacattgtcaaatgctttctcaa 26587155  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
      ||||||||| |||| || || || |||||||| ||||| | | |||| || |||  ||||||||||||||||| |||||| ||   ||||||||||||    
T  26587154 gatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaagagttgtcataagtgcccctacc 26587055  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
     |||||||| ||| |||| ||||||||||||    
T  26587054 tggcagaaaactgatttggtagggaccaata 26587024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 38348339 - 38348267
Alignment:
Q  159 aatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    |||||||||||||| |||||| ||||| | ||| |||||||||||||| ||||||||||||||||| ||||||    
T  38348339 aatttcctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaata 38348267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11897178 - 11896948
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  11897178 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcctagttgacgttgtcaaaagctttctcca 11897079  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897078 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 11896979  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
    |||||||||||||||||||||||||||||||    
T  11896978 aggcagaaagctgctttgatagggaccaata 11896948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 26432818 - 26433045
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |  |    
T  26432818 caatgcatgatgagtttgatggtgatgtctggaaacccaaaatcatggaggcagttgcttagaaattcccagttgacgttgtcaaaagctttctctagat 26432917  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| |||||||| ||||||| ||||| || ||   |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  26432918 caagcttgaaagctacgaaaccctttttcctcttcgatctcttcatgaaatgaaaaatttcctgcaaaacaatagagttatctgcggtacccctaccagg 26433017  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    ||| || |||||||||||||| ||||||    
T  26433018 caggaaactgctttgataggggccaata 26433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 23424525 - 23424311
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||| ||||||||||||||||||||||  ||||| ||||| || || |||||     | |||||||||||  |||| || ||||| |||||||||||||    
T  23424525 caatgtatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaatgctttctccaagt 23424426  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || ||||| |||||||| || || | | ||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||| |||    
T  23424425 ctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctactagg 23424326  T
Q  204 cagaaagctgctttg 218  Q
    |||||| ||||||||    
T  23424325 cagaaatctgctttg 23424311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 11889865 - 11890085
Alignment:
Q  7 tgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaa 106  Q
    |||||||||||||| ||||| || |  || || ||||| |||||||||||    |||| ||||||||||||||| || || ||||||||||| | |||||    
T  11889865 tgcatgatgagctttatggtaatatctgggaaaccaaagtcatggaggcaagcacttaagaaatcccagttgacattatcaaaagctttctctaggtcaa 11889964  T
Q  107 gcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcag 206  Q
    | ||| ||||||| || || |||||| | |||||   || ||| || || | |||||||||||||||||||| ||| || || ||||||||||| |||||    
T  11889965 gtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaatttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcag 11890064  T
Q  207 aaagctgctttgatagggacc 227  Q
     ||||||||||| ||||||||    
T  11890065 gaagctgctttggtagggacc 11890085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 17718481 - 17718708
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||| || ||| || |||||||| || || ||   | | || |||||||| ||||| || || || |||||||| | ||    
T  17718481 caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt 17718580  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || ||||| || ||| | |||||     ||||| ||||||| ||||||||||||||||| |||||||| | ||| |||||||||||    
T  17718581 ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg 17718680  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||||| || || ||||||    
T  17718681 cagaaagctgctttggtaagggccaata 17718708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 19019710 - 19019937
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||| || ||| || |||||||| || || ||   | | || |||||||| ||||| || || || |||||||| | ||    
T  19019710 caatgcatgatgagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggt 19019809  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || ||||| || ||| | |||||     ||||| ||||||| ||||||||||||||||| |||||||| | ||| |||||||||||    
T  19019810 ctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccagg 19019909  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||||| || || ||||||    
T  19019910 cagaaagctgctttggtaagggccaata 19019937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 38647305 - 38647532
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||| |||||     | ||||| ||||||||||| || || |||||||| |||| ||    
T  38647305 caatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatgcaggcaagaattaaggaagtcccagttgacattatcaaaagctttttccaggt 38647404  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||| ||| | | ||| |||||||| ||  |||| || |   |||||||||| | |||||||||||||||||| || ||||| |  || || ||||||||    
T  38647405 caagtttgaatgttacataaccctttttatttttggattttctcatgaaatgtacaatttcctgcaaaacaattgaattatcagatgttcctctaccagg 38647504  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    ||||||  ||||||||||| | ||||||    
T  38647505 cagaaaaatgctttgatagaggccaata 38647532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 53608423 - 53608637
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||||||  || || |||||||| || |||||     | || |||||||| ||||| || || ||||||||||| |  |    
T  53608423 caatgcatgatgagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaagat 53608522  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || || || || ||| | || ||    |||||  ||||||||||||||||||||||||| |||||||| | ||| |||||||||||    
T  53608523 cgagcttgaaagccacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctaccagg 53608622  T
Q  204 cagaaagctgctttg 218  Q
    |||||||||||||||    
T  53608623 cagaaagctgctttg 53608637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 49150035 - 49150116
Alignment:
Q  146 tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggacc 227  Q
    |||||||||||| |||||||||||||||||| ||||| ||   ||||||||||||||||||||| ||||| | |||||||||    
T  49150035 tcatgaaatgaacaatttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgctctaatagggacc 49150116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 15473656 - 15473795
Alignment:
Q  91 gctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcag 190  Q
    ||||| |||| ||||||| || |||| || |||||||| |||||||| ||    ||||| ||||| | |||||||||||||||||| |||||||| | ||    
T  15473656 gctttttccaggtcaagcctgaaagccacataaccctttttccttttggatcttttcataaaatgtacaatttcctgcaaaacaattgagttatcagaag 15473755  T
Q  191 tgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    | ||| ||||||||||||| || ||||||||||| ||||||    
T  15473756 taccc-taccaggcagaaaactactttgataggggccaata 15473795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 3659894 - 3659964
Alignment:
Q  160 atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat 230  Q
    ||||||||||||||||| || || || |  |||||||||||||| ||||| || ||||||||||| |||||    
T  3659894 atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat 3659964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 55025080 - 55025149
Alignment:
Q  162 ttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||||| || || || |  |||||||||||||| ||||| || ||||||||||| ||||||    
T  55025080 ttcctgcaaaacaattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaata 55025149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 20284879 - 20284649
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20284879 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttagaaaatcccagttgacgttgtcgaaagctttctcca 20284780  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20284779 agtcaagcttgtaagctacgtaacccttcttccttttagagtgtttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 20284680  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
    |||||||||||||||||||||||||||||||    
T  20284679 aggcagaaagctgctttgatagggaccaata 20284649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 31325079 - 31325302
Alignment:
Q  8 gcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaag 107  Q
    |||||||||||||||| |||||||  ||||| || ||||||||||||||     | ||||||||||| ||||| || || ||||||||||||| ||||||    
T  31325079 gcatgatgagcttgattgtgatgtctggaaaaccgaaatcatggaggcaagaattaaggaaatcccaattgacattatcaaaagctttctccaggtcaag 31325178  T
Q  108 cttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcaga 207  Q
     ||| |||||||||||||||||||| | || ||     ||||||| || | |||||||||||||||||| |||||||| | ||| |||||||||||||||    
T  31325179 tttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaatttcctgcaaaacaattgagttatcagaagttcccctaccaggcaga 31325278  T
Q  208 aagctgctttgatagggaccaata 231  Q
    || |||||| | ||||| ||||||    
T  31325279 aaactgcttcggtaggggccaata 31325302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 50451922 - 50451695
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||| || ||||||||||||| |||||| ||||| ||||| |||||     | || |||||||| ||||| || || || ||||| ||||| |    
T  50451922 caatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggcaagaattaagaaaatcccatttgacattatcaaatgctttttccaaat 50451823  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || ||||| || ||| | ||||| | | |||| ||||||||||||||||||||||||||||||||||| | ||| ||||||| |||    
T  50451822 cgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatgaataatttcctgcaaaacaatagagttatcagaagttcccctactagg 50451723  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||||| || || ||||||    
T  50451722 cagaaagctgctttggtaagggccaata 50451695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 50236688 - 50236915
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||     | ||||| ||| | || || || || ||||| || ||||| |    
T  50236688 caatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggagacaagaattgaggaagtcctaattaacattatcaaaagccttttccaaat 50236787  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgct-tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccag 202  Q
    |||||||  ||||||| || |||||||| ||||| || |  | |||||||||||| |||||||||||||||||| |||||||| |  || ||||||||||    
T  50236788 caagcttaaaagctacatagcccttctttctttt-gaatcttctcatgaaatgaacaatttcctgcaaaacaatcgagttatcagatgtacccctaccag 50236886  T
Q  203 gcagaaagctgctttgatagggaccaata 231  Q
    |||||||  ||||||||||||||||||||    
T  50236887 gcagaaaaatgctttgatagggaccaata 50236915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 43298385 - 43298158
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||| ||||| |||||||||||||  ||||||||||||  ||||||     |||| |||||||| ||||| || |  |||||||||| || ||    
T  43298385 caatgcatgataagcttcatggtgatgttcgagaatccaaaatcaatgaggcaagaatttagaaaatcccatttgacattattaaaagctttcttcaggt 43298286  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||| ||| | ||||| || ||||||||| |||||||     |||| |||||||  ||||||||||||||||| |||||||| | ||| ||||||| |||    
T  43298285 caagtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcctgcaaaacaattgagttatcagaagttcccctactagg 43298186  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    |||||| |||||||| || || ||||||    
T  43298185 cagaaaactgctttggtaagggccaata 43298158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10103800 - 10104022
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    |||||||||||||| || ||||||||||| |  | ||||||||| || || |||||     | ||||| |||||  |||| ||||| | || |||||| |    
T  10103800 acgcaatgcatgataagtttgatggtgatatctgaaaatccaaactcttgaaggcaagaattaaggaagtcccatctgacattgtcaatagttttctcta 10103899  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    | || |||||| |||| || || ||||||||| | ||||| | | | ||||||| ||||||||||||||||||||| |||||||| || || ||||||||    
T  10103900 aatcgagcttgaaagcaacatagcccttcttcttcttagatttccttatgaaataaataatttcctgcaaaacaattgagttatcagccgttcccctacc 10103999  T
Q  201 aggcagaaagctgctttgatagg 223  Q
    |||||||||||| ||||||||||    
T  10104000 aggcagaaagctactttgatagg 10104022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 1524852 - 1524767
Alignment:
Q  146 tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||| || | ||||||||||||||||||||| ||||| | ||| ||||||||||||||||| || ||||||||||| ||||||    
T  1524852 tcatgaagtggacaatttcctgcaaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaata 1524767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 23465224 - 23465137
Alignment:
Q  145 ttcatgaaatgaataatttcctgcaaaacaata-gagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||| |||||||| ||||| || | ||||| || | ||||||||||||||||||||| ||||| |||||||||||||||    
T  23465224 ttcatgaaatgaacaatttcctccaaaaaaaaatgagttgtcagtagtgcccctaccaggcagaaaactgctctgatagggaccaata 23465137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 5193219 - 5193271
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggca 56  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  5193219 caatgcatgataagcttgatggtgatgttcgtaaatccaaaatcaaggaggca 5193271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 14653797 - 14654027
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  14653797 acgcaatgcatgatgagcttgatggtgatgttaggaaatccaaaatcatggaggcagttgtttaggaattcccagttgacgttgtcgaatgctttctcca 14653896  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    | ||||||||| |||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653897 aatcaagcttgaaagctacgtatcccttcttcctcttagatcgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 14653996  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||| |||||||||||||||||||||    
T  14653997 aggcagaaaactgctttgatagggaccaata 14654027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 35135342 - 35135569
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||| |||||||| ||||  || || || ||||| ||||||||  |||  ||||| ||||||||||||||||| ||||||||||| || |    
T  35135342 caatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaagtcccagttgacgttgtcaaaagctttctctaaat 35135441  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| |||||||  |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| ||||  || |||||||||||    
T  35135442 caagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtctgaggtacccctaccagg 35135541  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    || ||| |||||||| ||||||| ||||    
T  35135542 caaaaaactgctttggtagggactaata 35135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 40328202 - 40327975
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||| |||||||| ||||  || || || ||||| ||||||||  |||  ||||| ||||||||||||||||| ||||||||||| || |    
T  40328202 caatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaattcccagttgacgttgtcaaaagctttctctaaat 40328103  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| |||||||  |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| ||||  || |||||||||||    
T  40328102 caagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtctgaggtacccctaccagg 40328003  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
     | ||| || ||||| ||||||||||||    
T  40328002 aaaaaaactactttggtagggaccaata 40327975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 19265440 - 19265213
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||| |||||||| ||||| || || || ||||| ||||||||  |||  ||||| ||| ||||||||||||| ||||||||||| || |    
T  19265440 caatgcatgatgagtttgatggtaatgtttgggaagccgaaatcctggaggcaaatgcgaaggaagtccaagttgacgttgtcaaaagctttctctaaat 19265341  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| |||| ||  |||||||||||||||||||| ||||||| || || || ||||||||||||||||| ||||| |||   || |||||||||||    
T  19265340 caagcttgaaagccacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaacaatggagttgtcttgggtacccctaccagg 19265241  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    || |||  ||||||| ||||||||||||    
T  19265240 caaaaaattgctttggtagggaccaata 19265213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 573215 - 573002
Alignment:
Q  5 aatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtc 104  Q
    |||||||||| || |||||||||||||  ||||||||||| ||||| ||||||    | |||||||||||  |||| ||  | |||||||| ||||||||    
T  573215 aatgcatgataagtttgatggtgatgtctggaaatccaaactcatgaaggcaggaattaaggaaatcccatctgacattaccaaaagctttttccaagtc 573116  T
Q  105 aagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggc 204  Q
     |||||| |||| || || ||||||||| |||| || |   |||||||||||| |||||||||||||||||| |||||||| | |||  |||||||| ||    
T  573115 gagcttgaaagcaacataccccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaattgagttatcagaagtttccctaccatgc 573016  T
Q  205 agaaagctgctttg 218  Q
    ||||| ||||||||    
T  573015 agaaaactgctttg 573002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 16322413 - 16322246
Alignment:
Q  64 aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt 163  Q
    ||||||||||| || || || || || ||||| |||| |||||||||| |||| ||||| ||||| |||||||| ||  | ||||| ||||| | |||||    
T  16322413 aggaaatcccaattaacattatcaaacgctttttccaggtcaagcttgaaagccacgtagccctttttccttttggatcgtttcataaaatgtaaaattt 16322314  T
Q  164 cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||| ||| ||||| || ||||| ||||||||||| |||||||| ||||||||||| ||||||    
T  16322313 cctgcaaaataattgagttgtcagcagtacccctaccaggtagaaagctactttgataggggccaata 16322246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 177445 - 177296
Alignment:
Q  82 ttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagt 181  Q
    ||||| ||||||||||| |  ||||| ||| |||| |||||||| || |||||||| ||   |  ||| ||||||| |||||||||||||||||||||||    
T  177445 ttgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaatttcctgcaaaacaatagagt 177346  T
Q  182 tatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    | || | ||||||||||||  |||| || |||||||| ||||||||||||    
T  177345 tgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaata 177296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 42403400 - 42403567
Alignment:
Q  64 aggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataattt 163  Q
    ||||| ||||||||||| || || || ||||| |||| |||||||||| | || || |||||||| |||||||| ||    ||||| ||||| |||||||    
T  42403400 aggaattcccagttgacattatcaaacgctttttccaggtcaagcttgaaggccacataaccctttttccttttggatcttttcataaaatgtataattt 42403499  T
Q  164 cctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||| || ||||| | ||| ||||||||||| ||||| || |||||  |||| ||||||    
T  42403500 cctgcaaaacaattgaattatcagaagtacccctaccaggtagaaaactactttggcaggggccaata 42403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 39012398 - 39012328
Alignment:
Q  160 atttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaat 230  Q
    ||||||||||||||||| || || || |  |||||||||||||| ||||| || ||||||||||| |||||    
T  39012398 atttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaat 39012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 7817159 - 7816932
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||||||||||||||| |||||||  || || |||||||||||||||||    || ||||||||||| |||||||||||||||||||| |||| ||    
T  7817159 caatgcatgatgagcttgattgtgatgtcagggaaaccaaaatcatggaggcacgaactaaggaaatcccaattgacgttgtcgaaagctttttccaggt 7817060  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||| ||| | |||||  | |||||||||||||||||  ||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||    
T  7817059 caagtttgaatgctacaaaccccttcttccttttagaccgcttcatgaaatgcaaaatttcctgcaaaacaatagagttatctgaagtacccctaccagg 7816960  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    |||||| |||||||| || || ||||||    
T  7816959 cagaaaactgctttggtaagggccaata 7816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 23944900 - 23944828
Alignment:
Q  146 tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg 218  Q
    ||||| ||||||||||||||||||||||||| || ||||| | ||| ||||||||||||||||||||||||||    
T  23944900 tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg 23944828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 6641139 - 6641366
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||| |||||| |||||||| ||||| | |||||| ||||| |||||||| ||   | | ||||| | ||| || || || || |||||||| |||| ||    
T  6641139 caatacatgataagcttgattgtgatatccggaaaaccaaagtcatggagacaagagttgaggaacttccaattaacattatcaaaagctttttccaggt 6641238  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| ||||||| || ||||| || ||||| ||    ||||| ||||| | |||||||||||||| ||| ||||||||   ||||||||||| |||    
T  6641239 caagcttgaaagctacatagcccttttttcttttggatcttttcataaaatggacaatttcctgcaaaataattgagttatcataagtgcccctacgagg 6641338  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
     ||||| || ||||||||||| ||||||    
T  6641339 tagaaaactactttgataggggccaata 6641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 23620887 - 23620971
Alignment:
Q  147 catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||| | |||||||||||||||||||||||| ||   |||||| |||||  ||||||| | |||||| ||||||||||||    
T  23620887 catgaaatggacaatttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaata 23620971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 54477530 - 54477758
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||||||  || ||  | |||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| | ||| |    
T  54477530 caatgcatgatgagcttgatggtgatgtcagggaactcgaaatcatgaaggcagttgctaaggaattcccaattgacattgtcaaaagcttttttcaaat 54477629  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgc-aaaacaatagagttatctgcagtgcccctaccag 202  Q
    |||||||  ||||||| ||||||||||| ||||| ||   | | ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  54477630 caagcttaaaagctacataacccttcttacttttggatctccttatgaaatgaattatttcctgcaaaaacaatagagttatctgaagtgccccttccag 54477729  T
Q  203 gcagaaagctgctttgatagggaccaata 231  Q
    ||||||| ||||||||  |||| ||||||    
T  54477730 gcagaaaactgctttggcaggggccaata 54477758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 3881742 - 3881512
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||| || ||||||||||||  ||||||  |||| ||||| |||||     | || |||||||| ||||| || || || ||||| ||||| |    
T  3881742 caatgcatgataagtttgatggtgatggccggaaaatcaaactcatgaaggcaagaattaagaaaatcccatttgacattatcaaatgctttttccaaat 3881643  T
Q  104 caagcttgtaagctacgtaacc---cttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    | |||||| |||| || |||||   ||||||| | ||||| | |||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  3881642 cgagcttgaaagcaacataacctttcttcttcttcttagacttcttcataaaatgaataatttcctgcaaaacaatagagttatcagaagttcccctacc 3881543  T
Q  201 aggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||| |||||||| || || ||||||    
T  3881542 aggcagaaaactgctttggtaagggccaata 3881512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 33803860 - 33803788
Alignment:
Q  146 tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttg 218  Q
    ||||| ||||||||||||||||||||||||| || ||||| | ||| ||||||||||||||||||||||||||    
T  33803860 tcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttg 33803788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 48848055 - 48847971
Alignment:
Q  147 catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    |||||| ||| | ||||||||||||||||| | ||| || | |||||||||||||| |||||| |||||||||||| ||||||||    
T  48848055 catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaata 48847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 46784742 - 46784826
Alignment:
Q  147 catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    |||||| |||| |||||||||||||||||||||||| || |  |||||| |||| || ||||| || ||||| ||||||||||||    
T  46784742 catgaagtgaacaatttcctgcaaaacaatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaata 46784826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 11296925 - 11297152
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||| | ||||||||||  || || ||||||||||||||| |    || || |||||||| ||||||||||| ||||||||||||||||    
T  11296925 caatgcatgatgagcataatggtgatgtcggggaaaccaaaatcatggaggaaagaactaagaaaatcccaattgacgttgtcaaaagctttctccaagt 11297024  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||||||| |||| || ||||||||||||||||||||     ||||||| || || ||||| ||||||||||| |||||||| | ||| || ||||||||    
T  11297025 caagcttgaaagcgacataacccttcttccttttagatcttatcatgaagtggatgatttcgtgcaaaacaattgagttatcagaagtaccactaccagg 11297124  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    |||||| ||||||||||||| |||||||    
T  11297125 cagaaaactgctttgataggaaccaata 11297152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 24893962 - 24894176
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||||||||||||||||||||  ||||| ||||| || || |||||     | |||||||||||  |||| || |||||||||||||||||||    
T  24893962 caatgcatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaaagctttctccaagt 24894061  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    | |||||| |||| || ||||| |||||||| || || | | ||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||||||    
T  24894062 ctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctaccagg 24894161  T
Q  204 cagaaagctgctttg 218  Q
    |||||||||||||||    
T  24894162 cagaaagctgctttg 24894176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 35233499 - 35233286
Alignment:
Q  18 cttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaagcttgtaagct 117  Q
    ||||||||||||||| || || || || ||||| ||||| || || || || ||||||||||| ||||| ||||||||||| |  ||||| ||| |||||    
T  35233499 cttgatggtgatgttagggaaaccgaagtcatgaaggcaattactaagaaactcccagttgacattgtcaaaagctttctctagatcaagtttgaaagct 35233400  T
Q  118 acgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgcttt 217  Q
    || || || |||||| |||| || |   ||||||| |||| |||||||| ||||||||| ||||| || |  ||||||||||||| |||||| |||||||    
T  35233399 acataccctttcttctttttggattttctcatgaagtgaacaatttccttcaaaacaattgagttgtcagaggtgcccctaccagacagaaaactgcttt 35233300  T
Q  218 gatagggaccaata 231  Q
    ||||||| ||||||    
T  35233299 gataggggccaata 35233286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 32725587 - 32725814
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||| |||||||     | || ||||||||  |||| || || ||||||||||||| ||    
T  32725587 caatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggaggcaagaattaagaaaatcccatctgacattatcaaaagctttctccaggt 32725686  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||| ||| ||||||| || ||||||||| |||||||     |||| || ||||  ||||||| ||||||||| ||||| ||   ||| ||||||  |||    
T  32725687 caagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttcctacaaaacaattgagttgtcataagttcccctattagg 32725786  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    |||||| |||||||| || || ||||||    
T  32725787 cagaaaactgctttggtaagggccaata 32725814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 75932 - 75707
Alignment:
Q  4 caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagt 103  Q
    |||||||  ||||||||||| |||||||   | || || ||||||||||||||| |||| || |||||| ||||||||||||| |||| ||||  ||  |    
T  75932 caatgcaaaatgagcttgatagtgatgtctaggaagccgaaatcatggaggcagatgctaagaaaatccaagttgacgttgtcaaaagatttc--catat 75835  T
Q  104 caagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccagg 203  Q
    |||| ||| |||||||  |  ||||||||||||| ||  |||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  75834 caagtttgaaagctacaaagtccttcttccttttggaacgcttcatgaagtgaattatttcctgcaaaacaataaagttatctgaagtgcccctaccagg 75735  T
Q  204 cagaaagctgctttgatagggaccaata 231  Q
    || | | || ||||||||||| ||||||    
T  75734 caaacaactactttgataggggccaata 75707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 23207989 - 23208206
Alignment:
Q  1 acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctcca 100  Q
    ||||||||||||||||| |||||||| || |  ||||| |||||||| ||||||||     | |||||||||||  |||| || ||||||||||||||||    
T  23207989 acgcaatgcatgatgagtttgatggtaatatctggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctcca 23208088  T
Q  101 agtcaagcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctacc 200  Q
    |||| |||||| |||| || ||||| |||||||| || || | | |||| || ||||||||||||||||||||||| ||||| || | ||| ||||||||    
T  23208089 agtctagcttgaaagcaacataacctttcttcctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacc 23208188  T
Q  201 aggcagaaagctgctttg 218  Q
     |||||||| ||||||||    
T  23208189 tggcagaaaactgctttg 23208206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 27781759 - 27781979
Alignment:
Q  7 tgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggaggcagttgcttaggaaatcccagttgacgttgtcgaaagctttctccaagtcaa 106  Q
    |||||||||||||| ||||| || |  || || ||||| ||||| |||||    |||| ||||||||| ||||| || || ||||||||||| | |||||    
T  27781759 tgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggcaagcacttaagaaatcccaattgacattatcaaaagctttctctaggtcaa 27781858  T
Q  107 gcttgtaagctacgtaacccttcttccttttagagtgcttcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcag 206  Q
    | ||| |||||||  |||| |||||| | |||||   |  ||| || || | |||||||| ||||||||||||||| || || ||||||||||| |||||    
T  27781859 gtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcctacaaaacaatagagttgtcagccgtgcccctacctggcag 27781958  T
Q  207 aaagctgctttgatagggacc 227  Q
     ||||||||||||||||||||    
T  27781959 gaagctgctttgatagggacc 27781979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 16770233 - 16770314
Alignment:
Q  150 gaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    |||||||| |||||||||||||||||| ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||||    
T  16770233 gaaatgaaaaatttcctgcaaaacaattgagttgtcagtagtgcccctaccaggcagaaaactgctctgataaggaccaata 16770314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 1579428 - 1579512
Alignment:
Q  147 catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    |||||| ||| | ||||||| ||||||||| ||||| || | || |||||||| ||||||||| |||||||||||||||||||||    
T  1579428 catgaagtgagttatttccttcaaaacaattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaata 1579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 8841 - 8764
Alignment:
Q  154 tgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaata 231  Q
    ||||||||||||||||||||||| |  || || |  ||||||||||||||||| || |||||||| || |||||||||    
T  8841 tgaataatttcctgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaaggaccaata 8764  T

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