View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12925_low_5 (Length: 245)
Name: NF12925_low_5
Description: NF12925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12925_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 7044633 - 7044728
Alignment:
| Q |
134 |
aagaaaaacttttttgggacatttgtctgagtatcccaacacttgtactacaaatatcacactggtgccggacacggatcaaaggagtgttgatca |
229 |
Q |
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| T |
7044633 |
aagaaaaacttttttgggacatttgtctgagtatcccaacacttgtactacaaatatcacactggtgccggacacagatcgaaggagtgttgatca |
7044728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 2924185 - 2924145
Alignment:
| Q |
11 |
gctaaaagcaaaacctataagcagaagctataaacaattag |
51 |
Q |
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| T |
2924185 |
gctataagcaaaacctataagtagaagctataaacaattag |
2924145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 7027345 - 7027388
Alignment:
| Q |
7 |
aaaagctaaaagcaaaacctataagcagaagctataaacaatta |
50 |
Q |
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| T |
7027345 |
aaaagttataagcacaacctataagcagaagctataaacaatta |
7027388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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