View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12926_high_3 (Length: 485)
Name: NF12926_high_3
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12926_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 40512095 - 40512531
Alignment:
| Q |
1 |
aatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataa |
100 |
Q |
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| T |
40512095 |
aatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataa |
40512194 |
T |
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| Q |
101 |
atttgtgacattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattg |
200 |
Q |
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| T |
40512195 |
atttgtgacattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattg |
40512294 |
T |
|
| Q |
201 |
cacacacttttccaacatgcttcttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtatttcaatttt |
300 |
Q |
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| T |
40512295 |
cacacacttttccaacatgcttcttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtatttcaatttt |
40512394 |
T |
|
| Q |
301 |
tctgtattaaatttctatgatgactttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttgga |
400 |
Q |
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| T |
40512395 |
tctgtattacatttctatgatgactttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttgga |
40512494 |
T |
|
| Q |
401 |
taagcaggttaattagcgctcatagcttaagcgtata |
437 |
Q |
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| T |
40512495 |
taagcaggttaattagcgctcataggttaagcgtata |
40512531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 24 - 437
Target Start/End: Original strand, 40481444 - 40481857
Alignment:
| Q |
24 |
ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa |
123 |
Q |
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| T |
40481444 |
ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa |
40481543 |
T |
|
| Q |
124 |
accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
223 |
Q |
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| T |
40481544 |
accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
40481643 |
T |
|
| Q |
224 |
ttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtatttcaatttttctgtattaaatttctatgatga |
323 |
Q |
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| T |
40481644 |
ttgacgctcgattgaaagaaggtaccagcaagctcctaaaatctattcagaatataaaagtatggtatttcaatttttctgtattacatttctatgatga |
40481743 |
T |
|
| Q |
324 |
ctttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttggataagcaggttaattagcgctcat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40481744 |
ctttactgtcatattatatgatgtatatgtatatgataaaaaacttattccacattctagtataggccaaatttggataagcaggttaattagcgctcat |
40481843 |
T |
|
| Q |
424 |
agcttaagcgtata |
437 |
Q |
| |
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|| ||||||||||| |
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| T |
40481844 |
aggttaagcgtata |
40481857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 21612710 - 21612599
Alignment:
| Q |
4 |
agaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatt |
103 |
Q |
| |
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||||||||||||| ||||||| || | |||||||||||| |||| |||||| |||||||||||||| |||||||| | ||||||||| |||||||| |
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| T |
21612710 |
agaagtacttattaaagaatgcagaggttgtaactttggatgtcactgcatcaccatatataccaaactgataaaagagagaatttggtgagcataaatt |
21612611 |
T |
|
| Q |
104 |
tgtgacattact |
115 |
Q |
| |
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|||||||||||| |
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| T |
21612610 |
tgtgacattact |
21612599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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