View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12926_high_4 (Length: 475)

Name: NF12926_high_4
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12926_high_4
NF12926_high_4
[»] chr2 (10 HSPs)
chr2 (18-453)||(20927506-20927941)
chr2 (22-206)||(9829349-9829533)
chr2 (25-156)||(8277191-8277322)
chr2 (43-156)||(22787801-22787914)
chr2 (25-156)||(35000444-35000575)
chr2 (27-156)||(11573851-11573987)
chr2 (27-149)||(31133335-31133457)
chr2 (19-158)||(19987720-19987861)
chr2 (19-91)||(12892382-12892454)
chr2 (88-198)||(20500422-20500534)
[»] chr3 (13 HSPs)
chr3 (22-206)||(54335604-54335788)
chr3 (22-214)||(20518054-20518246)
chr3 (22-198)||(30933800-30933976)
chr3 (22-198)||(11916888-11917064)
chr3 (18-198)||(30528455-30528635)
chr3 (22-190)||(53767190-53767358)
chr3 (32-190)||(14443735-14443893)
chr3 (27-156)||(7666699-7666828)
chr3 (25-156)||(19866950-19867082)
chr3 (27-156)||(35995304-35995433)
chr3 (22-139)||(39649710-39649827)
chr3 (59-156)||(34086603-34086700)
chr3 (26-156)||(35063134-35063263)
[»] chr1 (10 HSPs)
chr1 (22-214)||(23941577-23941769)
chr1 (22-198)||(16315132-16315308)
chr1 (22-214)||(12063502-12063694)
chr1 (22-214)||(30704312-30704504)
chr1 (22-156)||(3368237-3368371)
chr1 (27-156)||(48025756-48025884)
chr1 (27-156)||(25817616-25817745)
chr1 (27-156)||(33402876-33403005)
chr1 (27-156)||(35577256-35577385)
chr1 (18-92)||(18426366-18426440)
[»] chr7 (12 HSPs)
chr7 (22-214)||(23941285-23941477)
chr7 (22-174)||(44221991-44222143)
chr7 (18-214)||(4278544-4278741)
chr7 (22-198)||(11356297-11356473)
chr7 (25-156)||(2369666-2369797)
chr7 (30-156)||(4452395-4452521)
chr7 (18-195)||(13070451-13070618)
chr7 (21-194)||(12868575-12868749)
chr7 (70-156)||(4452757-4452843)
chr7 (43-169)||(31730894-31731021)
chr7 (19-77)||(2834739-2834797)
chr7 (23-89)||(23562296-23562362)
[»] chr5 (14 HSPs)
chr5 (22-214)||(32910527-32910719)
chr5 (22-198)||(29195832-29196008)
chr5 (18-197)||(15235040-15235222)
chr5 (24-214)||(20887674-20887864)
chr5 (27-156)||(30491525-30491655)
chr5 (27-156)||(38739554-38739682)
chr5 (25-156)||(34017407-34017538)
chr5 (27-156)||(763115-763243)
chr5 (22-159)||(5504930-5505063)
chr5 (74-198)||(35050308-35050432)
chr5 (61-156)||(33143948-33144043)
chr5 (71-156)||(16109319-16109403)
chr5 (68-161)||(8736460-8736555)
chr5 (19-93)||(23276021-23276095)
[»] scaffold0599 (1 HSPs)
scaffold0599 (22-198)||(8639-8815)
[»] chr4 (18 HSPs)
chr4 (28-162)||(22182152-22182286)
chr4 (22-198)||(50008802-50008978)
chr4 (22-198)||(50336197-50336373)
chr4 (22-198)||(33990720-33990896)
chr4 (32-198)||(43210007-43210171)
chr4 (23-189)||(41418878-41419044)
chr4 (59-214)||(156888-157043)
chr4 (27-156)||(24972607-24972736)
chr4 (34-198)||(1938538-1938702)
chr4 (27-156)||(23283379-23283508)
chr4 (22-198)||(12656473-12656656)
chr4 (30-156)||(36499124-36499250)
chr4 (41-156)||(55523943-55524058)
chr4 (49-156)||(12586403-12586510)
chr4 (27-152)||(45246763-45246888)
chr4 (121-198)||(5534180-5534257)
chr4 (45-158)||(6599370-6599486)
chr4 (21-93)||(24904254-24904326)
[»] chr8 (14 HSPs)
chr8 (18-195)||(13868179-13868358)
chr8 (18-174)||(32075008-32075163)
chr8 (45-211)||(24626061-24626228)
chr8 (102-206)||(20534367-20534471)
chr8 (22-198)||(2807162-2807338)
chr8 (117-214)||(22661841-22661938)
chr8 (21-161)||(14189775-14189917)
chr8 (18-106)||(20532092-20532180)
chr8 (27-148)||(34276417-34276538)
chr8 (85-198)||(41601078-41601191)
chr8 (21-160)||(27188182-27188323)
chr8 (22-85)||(22661933-22661996)
chr8 (352-414)||(23502616-23502679)
chr8 (120-156)||(33228335-33228371)
[»] scaffold1050 (1 HSPs)
scaffold1050 (22-214)||(2003-2196)
[»] chr6 (7 HSPs)
chr6 (27-156)||(31522355-31522484)
chr6 (24-162)||(13543661-13543798)
chr6 (27-156)||(32275553-32275682)
chr6 (49-195)||(8518467-8518615)
chr6 (85-127)||(4321590-4321632)
chr6 (122-161)||(7452450-7452489)
chr6 (24-73)||(7452361-7452410)
[»] scaffold0037 (1 HSPs)
scaffold0037 (41-156)||(38133-38248)
[»] scaffold1063 (1 HSPs)
scaffold1063 (27-156)||(1643-1772)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 20927506 - 20927941
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927506 tttagatgatacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 20927605  T
Q  118 ttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgacttcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  20927606 ttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtatggactggtgggctttgtacaaaaacagtaactctgtgtgacttaag 20927705  T
Q  218 tagcacatgggtaaatatgtaaattcagttgggcgcgagtgaattttgttgggtaaagagcagatttcattctattttgtctcacatctcacttgtctcc 317  Q
    |||| || ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20927706 tagcgcaggggtaaatatgtaaattcagttgggcgcaggtgaattttgttgggtaaagagcagaattcattctattttgtctcacatctcacttgtctcc 20927805  T
Q  318 ttttaacagatttctctcatctccctggcaactttggcaattctgttttaccactagccacctcagcatgccctttctttctcttgtttttcctcacttt 417  Q
    |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20927806 ttttaacagatttcccttatcaccctggcaactttggcaattctgttttaccactagccacctcagcattccctttctttctcttgtttttcctcacttt 20927905  T
Q  418 attccctacaaactttattcccaacacttggatctt 453  Q
    | ||||||||||||||||||||||||||||| ||||    
T  20927906 actccctacaaactttattcccaacacttgggtctt 20927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 9829349 - 9829533
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||| | ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| || ||    
T  9829349 gatgatataatacatgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgc 9829448  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctg 206  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||| ||||||| |||||||    
T  9829449 actttttgagtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgtacgaaaacagtaactctg 9829533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 8277191 - 8277322
Alignment:
Q  25 gatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 124  Q
    ||||||||||||| | |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |    
T  8277191 gatacattacctgttctttgatacttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcatt 8277290  T
Q  125 ttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||  |||||||| ||||||||||||||||||    
T  8277291 tttgaggtttttggaggtggagggaaagaaaa 8277322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 22787801 - 22787914
Alignment:
Q  43 tgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggt 142  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||| || ||||||| |||||||||| ||||    
T  22787801 tgatgcttgatgagcgtagaaacttacttcatgacgatttgcaatgatttagaatgaagattttgacccaaaaattcgcactttatgggtttttggaggt 22787900  T
Q  143 ggagggaaagaaaa 156  Q
    ||||||||||||||    
T  22787901 ggagggaaagaaaa 22787914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 35000575 - 35000444
Alignment:
Q  25 gatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 124  Q
    ||||||||||||| | ||||||||||||||||  || | |||||||||||| |||||||||||||||||||| ||||||||||||| |||| || |||||    
T  35000575 gatacattacctgttctttgatgcttgatgagtgtatagacttgcttcctggcgatttgcaatgatttggaacgaagattttgacccaaaagttcgcact 35000476  T
Q  125 ttttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||||||||  ||||||| ||||||||||    
T  35000475 ttttgggtttttagaggtggaaggaaagaaaa 35000444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 11573987 - 11573851
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt-------tt 119  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||       |     
T  11573987 tacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacatc 11573888  T
Q  120 gcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  11573887 gcacttttggggtttttggaggtggagggaaagaaaa 11573851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 31133457 - 31133335
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||| | |||||||||| ||  | |||||||||||| |||||||||||||||||||||| |||| ||  ||||||    
T  31133457 tacattacctgttctttgatgcttgatgaacatagaaacttgttttataacgatttgcaataatttggaatgaagattttgacccaaaaattctcacttt 31133358  T
Q  127 ttgggtttttgaaggtggaggga 149  Q
    ||||||||||| |||||||||||    
T  31133357 ttgggtttttggaggtggaggga 31133335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 19987861 - 19987720
Alignment:
Q  19 ttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattt 118  Q
    |||||||||||||||||| || ||| | | || |||||| ||||||||||||||||||| |||||| |||||||    | |||||||||  | ||| |||    
T  19987861 ttagatgatacattacctaattttttacgtttcatgagcgtagaaacttgcttcctgacaatttgcgatgatttcagctcaagattttgctccaaatttt 19987762  T
Q  119 tgcactttttgggtttttgaaggtg--gagggaaagaaaatg 158  Q
      ||||||||| |||||||||||||  |||||||||||||||    
T  19987761 cccactttttgagtttttgaaggtgaagagggaaagaaaatg 19987720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 12892382 - 12892454
Alignment:
Q  19 ttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatt 91  Q
    ||||||||||||||||||||| ||| | | ||||| ||| ||||||||| |||| ||||||||| ||||||||    
T  12892382 ttagatgatacattacctgatttttaacgtttgattagcatagaaacttacttcatgacgatttccaatgatt 12892454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 20500534 - 20500422
Alignment:
Q  88 gatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtg--gagggaaagaaaatggtgcatggagtatggaccgatgggctt 185  Q
    |||||| |||||||||||||||| ||||  | |||||||||||  ||||| | |||  |||||||||||||||| || || ||||||||  ||| || ||    
T  20500534 gatttgaaatgaagattttgacccaaaaaatcgcactttttggaattttggaagtgaagagggaaagaaaatggagcttgcagtatggaatgataggttt 20500435  T
Q  186 tgtacaaaaacag 198  Q
    | |||||||||||    
T  20500434 tatacaaaaacag 20500422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 54335788 - 54335604
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||    
T  54335788 gatgatataatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaatttgc 54335689  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctg 206  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| | ||||||||||||||| |||||||    
T  54335688 actttttgggtttttgaaggtggagggaaagaaaatggtgcttgaagtatggactgatgagttttgtacaaaaacagtaactctg 54335604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 20518054 - 20518246
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||| ||||| |||| |||||||||| |||| || ||    
T  20518054 gatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttacaatgctttgggatgaggattttgacccaaaaattcgc 20518153  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||| ||||||  ||||||| |||||||    
T  20518154 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtatggacttatgggttttgtacgaaaacattaactctgcgtgactt 20518246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 30933800 - 30933976
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||  ||||    
T  30933800 gatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaattgc 30933899  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||  ||| | ||||||| |||||||    
T  30933900 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactaatgagttttgtacgaaaacag 30933976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 11917064 - 11916888
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||| |||| || ||    
T  11917064 gatgatacaatacctgatattttgtgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgc 11916965  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||| ||||||| |||||||    
T  11916964 actttttgggtttttgaaggtggagggaaaaaaaatggtgcttggagtatggactgctgggttttgtacgaaaacag 11916888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 30528635 - 30528455
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 117  Q
    ||||||||||| ||||| |||||||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||      
T  30528635 tttagatgatagattacatgatatttgatgtttgatgagtatagaaacttgcttcctgacgatttgcaatgatttagaatgaagattttgatccaaaaaa 30528536  T
Q  118 ttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    | |||||||||||||||||| ||||||||||||||||||||| |  |||||||||||  |||||  |||||||||||||||    
T  30528535 tcgcactttttgggtttttggaggtggagggaaagaaaatggcgattggagtatggattgatggattttgtacaaaaacag 30528455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 53767358 - 53767190
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||| ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||  ||||||||| ||||  || |    
T  53767358 gatgatacaatacatgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgagaattttgacccaaaaaattac 53767259  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtac 190  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||    
T  53767258 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgtac 53767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 14443735 - 14443893
Alignment:
Q  32 tacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttggg 131  Q
    ||||||||  ||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||| ||||  | ||||||||||||    
T  14443735 tacctgatcattggtgcttgatgagcgtagaaacttacttcctgacgatttgcaatgatttgggatgaggattttgaccgaaaaaatcgcactttttggg 14443834  T
Q  132 tttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtac 190  Q
    |||||| |||||||||||||||||||||||| |||||| ||||  |||||| |||||||    
T  14443835 tttttggaggtggagggaaagaaaatggtgcttggagtttggaatgatgggttttgtac 14443893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 7666699 - 7666828
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    |||||||| || | ||||||||||||||||| |||||||||  ||||||| |||||||||||||||||||||||||||||  || ||||||| |||||||    
T  7666699 tacattacatgttctttgatgcttgatgagcgtagaaacttatttcctgatgatttgcaatgatttggaatgaagattttacccaaaaatttcgcacttt 7666798  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||||||| ||||||||||||||||||    
T  7666799 ttgggtttttggaggtggagggaaagaaaa 7666828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 19867082 - 19866950
Alignment:
Q  25 gatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 124  Q
    ||||||||||||| | ||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||||| |||||    
T  19867082 gatacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacaatttacaatgatttggaatgaagattttcacccaaaatttcgcact 19866983  T
Q  125 ttttg-ggtttttgaaggtggagggaaagaaaa 156  Q
    ||| | |||||||| ||||||||||||||||||    
T  19866982 tttggaggtttttggaggtggagggaaagaaaa 19866950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 35995433 - 35995304
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || | ||| ||| |||| ||  ||||||    
T  35995433 tacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaaaaattttacccaaaaattcacacttt 35995334  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||||||||||||    
T  35995333 tggggtttttggaggtggagggaaagaaaa 35995304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 39649710 - 39649827
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    |||| ||||||||||  | ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  39649710 gatggtacattacctattctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgc 39649809  T
Q  122 actttttgggtttttgaa 139  Q
    |||||| | |||||||||    
T  39649810 acttttggagtttttgaa 39649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 34086603 - 34086700
Alignment:
Q  59 tagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||||||||||||||    
T  34086603 tagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagaaaa 34086700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 35063263 - 35063134
Alignment:
Q  26 atacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactt 125  Q
    |||||||||||  | |||||| |||||||||| |||||||||| ||| |||||||||||||||||||||| | |||||||| ||| ||||||| ||||||    
T  35063263 atacattacctattctttgatacttgatgagcgtagaaacttgtttc-tgacgatttgcaatgatttggattaaagatttttacccaaaatttcgcactt 35063165  T
Q  126 tttgggtttttgaaggtggagggaaagaaaa 156  Q
    || || |||||| ||||||||||||||||||    
T  35063164 ttgggatttttggaggtggagggaaagaaaa 35063134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 23941769 - 23941577
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||  ||||    
T  23941769 gatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgacgatttgcaatgatttgggatgagggttttgacccaaaaaattgc 23941670  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||| ||| ||| |||||||    
T  23941669 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgtacaaaaacagtaacactgcgtgactt 23941577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 16315132 - 16315308
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||  | ||    
T  16315132 gatgatacaataccttatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaagattttgatccaaaaaatcgc 16315231  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||||| ||||| |||||| ||||||| |||||||    
T  16315232 actttttgggtttgtgaaggtggagggaaagaaaatggtgtttggagtttggactgatgggttttgtacgaaaacag 16315308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 12063694 - 12063502
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||  |  |    
T  12063694 gatgatacaatacctgatatttagtgcttgatgagtgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcac 12063595  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||| ||||| |||||| ||||||| ||||||| ||| |||||| ||||    
T  12063594 actttttgggtttttgaaggaagagggaaagaaaatggtgcttggagtttggactgatgggttttgtacgaaaacagtaacactgtgtcactt 12063502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 30704312 - 30704504
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| || |||||||||| || || |||||  |||||||||||||||||||||||||||||||||||  ||||  ||||||||| ||||  | ||    
T  30704312 gatgatacaatatctgatatttggtgtttaatgagtgtagaaacttgcttcctgacgatttgcaatgatttgagatgagaattttgacccaaaaagtcgc 30704411  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | ||||||| ||||||| ||| |||||| ||||    
T  30704412 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgagttttgtacgaaaacagtaacactgtgtcactt 30704504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 3368371 - 3368237
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||||||| |||| ||||||||||||| ||  |||||||||||||||||| ||||||||||||||  ||||||||||||||||| |||   | ||    
T  3368371 gatgatacattacttgatgtttgatgcttgataagtgtagaaacttgcttcctgatgatttgcaatgattatgaatgaagattttgacccaaataatcgc 3368272  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||||||||||| ||||||||||||||||||    
T  3368271 actttttgggtttttggaggtggagggaaagaaaa 3368237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 48025884 - 48025756
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| ||| ||||||| |||| ||    
T  48025884 tacattacctgttctttgatgcttgatgagcatagaaacttgtttcttgatgatttgcaatgatttggaatgaagatttttacccaaaatttcgcac-tt 48025786  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||| ||||| ||||||||||||||||||    
T  48025785 ttggggttttggaggtggagggaaagaaaa 48025756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 25817745 - 25817616
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | | |||||||||| ||||  ||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||| ||  ||||||    
T  25817745 tacattacctgttctatgatgcttgacgagcgcagaaacttgctttatgacgatttgcaatgatttggaacgaagattttgacccaaaaattcacacttt 25817646  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||||||| ||||||||||||||||||    
T  25817645 ttgggtttttggaggtggagggaaagaaaa 25817616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 33402876 - 33403005
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | |||||||||| |||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  33402876 tacattacctgttctttgatgcttaatgagcgtagaaacttgtttccggaagatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttt 33402975  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||  |||||||| |||||||||    
T  33402976 tggggtttttagaggtggagcgaaagaaaa 33403005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 35577256 - 35577385
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||  ||||| ||| ||||||| |||||||    
T  35577256 tacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctaacgatttgcaatgatttggaatgagtatttttaccaaaaatttcgcacttt 35577355  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||| | ||||||||    
T  35577356 tggggtttttggaggtggacgaaaagaaaa 35577385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 18426366 - 18426440
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgattt 92  Q
    |||||||||||||||| ||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||    
T  18426366 tttagatgatacattatctgatttttgacgtttgatgagcgtagaaacttgcttcctgacgatttgcaatgattt 18426440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 23941477 - 23941285
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||| || ||    
T  23941477 gatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgaggattttgaccaaaaaattcgc 23941378  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | ||||||| ||||||| ||| ||| |||||||    
T  23941377 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgagttttgtacgaaaacagtaacactgcgtgactt 23941285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 44222143 - 44221991
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||  | ||    
T  44222143 gatgatacaatacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgc 44222044  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatgga 174  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  44222043 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttgga 44221991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4278741 - 4278544
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgctt-cctgacgatttgcaatgatttggaatgaagattttgacctaaaat 116  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||||||| |||| |||||||||| ||||     
T  4278741 tttagatgatacaatacctgatatttggtgcttgatgagcgtagaaacttactttcctgacgatgtgcaatgatttgggatgaggattttgaccaaaaaa 4278642  T
Q  117 tttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||  |||||||| ||| |||||| ||||||| ||||||| |||| || |||||||    
T  4278641 ttctcacttttggggtttttgaaggtggagggaaagaaaatggtgtttggagtatcgactgatgggttttgtacgaaaacagtaactttgcgtgactt 4278544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 11356473 - 11356297
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||||  | ||    
T  11356473 gatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgatgatttgcaatgatttgggatgagaattttgacccaaaaaatcgc 11356374  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||| || |||||||    
T  11356373 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgcacgaaaacag 11356297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 2369666 - 2369797
Alignment:
Q  25 gatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 124  Q
    ||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||  ||||    
T  2369666 gatacattacctgttctttgatgcttgatgagtgtagaaacttgcttcatgacgatttgcaatgatttggaatgaagattttgacccaaaaattcacact 2369765  T
Q  125 ttttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||||||||  ||||||||||||||||||    
T  2369766 ttttgggtttttagaggtggagggaaagaaaa 2369797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 4452395 - 4452521
Alignment:
Q  30 attacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttg 129  Q
    |||||||| | |||||||||||||||   |||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| || ||||||||||    
T  4452395 attacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttg 4452494  T
Q  130 ggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||| || |||||||||||||||    
T  4452495 ggtttttggagatggagggaaagaaaa 4452521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 13070451 - 13070618
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 117  Q
    |||||||||||||||  |||||||||||||||||||| |  |||||||||||||| |||          |||||||||||||||||||||||| ||||      
T  13070451 tttagatgatacattgtctgatatttgatgcttgatgggtgtagaaacttgcttcatga----------tgatttggaatgaagattttgacccaaaaaa 13070540  T
Q  118 ttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaa 195  Q
    |  ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||    
T  13070541 tcacactttttgggtttttggaggtggagggaaagaaaatggtgcttggaatatggactgctgggttttatacaaaaa 13070618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 12868749 - 12868575
Alignment:
Q  21 agatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacc-taaaatttt 119  Q
    ||||||||||||| ||||| ||| ||||||||||||  ||||||||| |||||| |||||||| ||||||||| ||||||||||||||||  |||| |||    
T  12868749 agatgatacattatctgattttttatgcttgatgagtgtagaaacttacttcctcacgatttgtaatgatttgaaatgaagattttgaccaaaaaaattt 12868650  T
Q  120 gcactttttgggtttttgaaggtg--gagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaa 194  Q
    |||| ||||||||||||| |||||  || |||||||||||||||  ||||||  |||  |||||| |||||||||||    
T  12868649 gcac-ttttgggtttttggaggtgaagaaggaaagaaaatggtg-ttggagttgggattgatgggttttgtacaaaa 12868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 4452757 - 4452843
Alignment:
Q  70 ttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||    
T  4452757 ttcctgatgatttgcaattatttggaatgaagattttgacccaaaaatttgcactttttaggtttttggaggtggagggaaagaaaa 4452843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 31731021 - 31730894
Alignment:
Q  43 tgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggt 142  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||| || ||||||||| |||||| | || || ||||| |||||||||||| ||||    
T  31731021 tgatgtttgatgagtgtagaaacttgcttcctgacgatttgcaatgatatgaaatgaagatattgacccacaa-ttcgcactctttgggtttttggaggt 31730923  T
Q  143 g--gagggaaagaaaatggtgcatggagt 169  Q
    |  ||||||||||||||||||| ||||||    
T  31730922 ggagagggaaagaaaatggtgcttggagt 31730894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2834797 - 2834739
Alignment:
Q  19 ttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgac 77  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||    
T  2834797 ttagatgatacattacctgatttttgacgtttgatgagcgtagaaacttgcttcatgac 2834739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 23562296 - 23562362
Alignment:
Q  23 atgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatga 89  Q
    |||||||||||| |||| ||| ||||||||||||| ||||||||||||| || |||||||| |||||    
T  23562296 atgatacattacttgatttttaatgcttgatgagcgtagaaacttgctttctaacgatttgaaatga 23562362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 32910719 - 32910527
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||| ||||| ||||  ||||||||| |||| || ||    
T  32910719 gatgatacaatacctgatatttggtgcttgatgagtgtagaaacttgcttcatgacgatttgcaatggtttgggatgagaattttgacccaaaaattcgc 32910620  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||| ||||||| ||||||| |||||||    
T  32910619 actttttgggtttttgaaggtggagggaaagaaaatggtgcttgaagtatggactgatgggttttgtacgaaaacagtaactctgcgtgactt 32910527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 29195832 - 29196008
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||| | ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||  ||||    
T  29195832 gatgatataatacctgatatttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggatgaggatattgacctaaaaaattgc 29195931  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||  ||||| ||||||| |||||||    
T  29195932 actttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactaatgggttttgtacgaaaacag 29196008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 15235040 - 15235222
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttga-cctaaaat 116  Q
    ||||||||||||||||| |||||||||||||||||||||  ||  ||||||||| |||||||||||||||||||||||||||||||||||| || ||||     
T  15235040 tttagatgatacattacttgatatttgatgcttgatgagtgtatgaacttgctttctgacgatttgcaatgatttggaatgaagattttgacccaaaaaa 15235139  T
Q  117 tttgcactttttgggtttttgaaggt--ggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaaca 197  Q
     |||||||||||||||||||| ||||   |||||||| |||||||||| |||||||||||| ||| || ||||||||||||||    
T  15235140 attgcactttttgggtttttggaggtcgagagggaaataaaatggtgcttggagtatggactgattggttttgtacaaaaaca 15235222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 20887674 - 20887864
Alignment:
Q  24 tgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcac 123  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||  ||||  |  |||    
T  20887674 tgatacaatacctgatatttggtgcttgataagcgtagaaactttcttcctgacgatttgcaatgatttgggatgaggattttgactcaaaaaatcccac 20887773  T
Q  124 tttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    |||||||||||||||||||| |||||||||||||||||| ||| || ||||| |||||| ||||||| ||||||| ||| |||||| ||||    
T  20887774 tttttgggtttttgaaggtgtagggaaagaaaatggtgcttggtgtttggactgatgggttttgtacgaaaacagtaacactgtgtcactt 20887864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 30491525 - 30491655
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  30491525 tacattacctgttctttgatgcttgatgagcgtagaaacttgtctcctgacgatttgcaatgatttggaatgaagattttgactcaaaatttcgcacttt 30491624  T
Q  127 t-tgggtttttgaaggtggagggaaagaaaa 156  Q
    |  ||||||||| ||||||||||||||||||    
T  30491625 tgggggtttttggaggtggagggaaagaaaa 30491655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 38739682 - 38739554
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||  ||||||    
T  38739682 tacattacctgttctttgatgcttgatgagcgtagaa-cttgtttcctgacgatttgcaatgatttagaatgaagattttgacccaaaaattctcacttt 38739584  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||||||||| ||||||||||||||||||    
T  38739583 ttgggtttttggaggtggagggaaagaaaa 38739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 34017407 - 34017538
Alignment:
Q  25 gatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 124  Q
    |||||||||| || | ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  34017407 gatacattacatgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttgaaatgaagatttttacccaaaattttgcact 34017506  T
Q  125 ttttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||| |  |||||| |||||||| |||||||||    
T  34017507 tttggaatttttggaggtggagtgaaagaaaa 34017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 763115 - 763243
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||  | ||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||| | | ||||||| |||| ||    
T  763115 tacattacctattctttgatgcttgatgagcgtagaaatttgtttcctaacgatttgcaatgatttggaatgaagatttttatccaaaatttcgcac-tt 763213  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    ||||  ||||||||||||||||||||||||    
T  763214 ttggaattttgaaggtggagggaaagaaaa 763243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 5505063 - 5504930
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    |||| ||||||||||| | |||||| |||||||||| ||||||| || || |||||||||||||||||||    ||||||||||| ||| ||||||||||    
T  5505063 gatggtacattacctgttctttgattcttgatgagcgtagaaacctgttttctgacgatttgcaatgatt----atgaagatttttacccaaaattttgc 5504968  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatgg 159  Q
    |||||| | ||||||| ||||||||||||| |||||||    
T  5504967 acttttggagtttttggaggtggagggaaaaaaaatgg 5504930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 35050308 - 35050432
Alignment:
Q  74 tgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatgg 173  Q
    ||||||||||||||||||||| |||| |||||||||| ||||  | | |||||||   ||||||||||||||||||||||||||||||| |||||| |||    
T  35050308 tgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgtactttttttatttttgaaggtggagggaaagaaaatggtgcttggagtctgg 35050407  T
Q  174 accgatgggctttgtacaaaaacag 198  Q
    || |||| | ||||||| |||||||    
T  35050408 actgatgagttttgtacgaaaacag 35050432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 33143948 - 33144043
Alignment:
Q  61 gaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||| ||| ||||| ||||||||||||||||||    
T  33143948 gaaacttgttttctgacgatttgcaatgatttggaatgaagattttcacccaaaatttcgcatttttgggggttttggaggtggagggaaagaaaa 33144043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 16109403 - 16109319
Alignment:
Q  71 tcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||  | |||||||||||||||||| ||||||||||||||||||    
T  16109403 tcctgacgattt-caataatttggaatgaagattttgacccaaaaaatcgcactttttgggtttttggaggtggagggaaagaaaa 16109319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 8736460 - 8736555
Alignment:
Q  68 gcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtg--gagggaaagaaaatggtg 161  Q
    ||||||||| |||||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||| |||||  ||||||||||||| ||||    
T  8736460 gcttcctgatgatttgcaatgatttgaaatgaagattttgattcaaaaatttgcactttttgggtttttggaggtggagagggaaagaaaagggtg 8736555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 23276095 - 23276021
Alignment:
Q  19 ttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttg 93  Q
    |||||||||||||||| | || ||||| | || |||||  |||||||||||||||| ||| ||| ||||||||||    
T  23276095 ttagatgatacattacataatttttgacgttttatgagtgtagaaacttgcttcctaacgttttccaatgatttg 23276021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 8815 - 8639
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||| |||| || ||    
T  8815 gatgatacaatacctgatattttgtgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgc 8716  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||| ||||||| |||||||    
T  8715 actttttgggtttttgaaggtggagggaaaaaaaatggtgcttggagtatggactgctgggttttgtacgaaaacag 8639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 22182152 - 22182286
Alignment:
Q  28 acattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttt 127  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  22182152 acattacctgatatttgatgcttgatgagcgtagaaacttgcttcttaacgatttgcaatgatttggaatgaagattttgacctaaaaaattgcactttt 22182251  T
Q  128 tgggtttttgaaggtggagggaaagaaaatggtgc 162  Q
    |||||||||| ||||||||||||||||||||||||    
T  22182252 tgggtttttggaggtggagggaaagaaaatggtgc 22182286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 50008802 - 50008978
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||  | ||    
T  50008802 gatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgc 50008901  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||| ||||||||||||| ||||||||||||||||||| | |||| ||||| |||||| ||||||| |||||||    
T  50008902 acttttttggtttttgaaggtcgagggaaagaaaatggtgcttcgagtttggactgatgggttttgtacgaaaacag 50008978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 50336197 - 50336373
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||  | ||    
T  50336197 gatgatacaatacctgatatttggtgcttgatgagcatagaaacttgcttcatgacgatttgcaatggtttgggatgaggattttgacccaaaaaatcgc 50336296  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||| ||||||| |||||||    
T  50336297 actttttgggtttttgaaggtggagggaaagaaaatggtgcttgaagtttggactgatgggttttgtacgaaaacag 50336373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 33990896 - 33990720
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    ||||||||| ||| ||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||| |||| |||||||||| ||||  | ||    
T  33990896 gatgatacaatacttgatatttggtgcttgatgagcgtagaaacttgattcatgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgc 33990797  T
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||| ||||||| |||||||    
T  33990796 actttttgggtttttgaaggtggaaggaaagaaaatggtgcttggagtttggactgatgggttttgtacgaaaacag 33990720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 43210007 - 43210171
Alignment:
Q  32 tacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttggg 131  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||  | ||||||||  ||    
T  43210007 tacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttt--gg 43210104  T
Q  132 tttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||| |||||||    
T  43210105 tttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgtacgaaaacag 43210171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 41419044 - 41418878
Alignment:
Q  23 atgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgca 122  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||||| |||| |||||||| |||||||||| |||| |||||||||| ||||  | |||    
T  41419044 atgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcgtcctaacgatttgtaatgatttgggatgaggattttgacccaaaaaatcgca 41418945  T
Q  123 ctttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgta 189  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||    
T  41418944 ctttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgta 41418878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 156888 - 157043
Alignment:
Q  59 tagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaatg 158  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  156888 tagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagggaaagaaaatg 156987  T
Q  159 gtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    |||| |||||| ||||| |||||  ||||||| ||||||| ||| ||| |||||||    
T  156988 gtgcttggagtttggactgatggattttgtacgaaaacagtaacactgcgtgactt 157043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 24972736 - 24972607
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  24972736 tacattacctgttatttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttt 24972637  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||||||||||||    
T  24972636 tggggtttttggaggtggagggaaagaaaa 24972607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 1938702 - 1938538
Alignment:
Q  34 cctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtt 133  Q
    |||| |||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||| |||| |||||||||| ||||  | ||||||||||||||    
T  1938702 cctggtatttggtgcttgatgagcatagaaactttctttctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtt 1938603  T
Q  134 tttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||| | |||||||    
T  1938602 tttgaaggtggagggaaagaaaatggtgcttggagtttggactgatgggttttgtgcgaaaacag 1938538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 23283508 - 23283379
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  23283508 tacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttagaatgaagatttttacccaaaattttgcacttt 23283409  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||||||||||||    
T  23283408 tggggtttttggaggtggagggaaagaaaa 23283379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 12656656 - 12656473
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaa------- 114  Q
    ||||||| | ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| || | |||||||||| |||           
T  12656656 gatgatataatacctgatatttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggataaggattttgacccaaaaaatcgc 12656557  T
Q  115 attttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    | || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||  ||||||| |||||||    
T  12656556 acttcgcactttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttggactgatggattttgtacgaaaacag 12656473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 36499250 - 36499124
Alignment:
Q  30 attacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttg 129  Q
    |||||||| | ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |    
T  36499250 attacctgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttgg 36499151  T
Q  130 ggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||| ||||||||||||||||||    
T  36499150 ggtttttggaggtggagggaaagaaaa 36499124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 55524058 - 55523943
Alignment:
Q  41 tttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaag 140  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||    
T  55524058 tttgatgcttgatgagcgtagaaacttgtttcctgacgatttacaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttgcag 55523959  T
Q  141 gtggagggaaagaaaa 156  Q
    ||||||||||||||||    
T  55523958 gtggagggaaagaaaa 55523943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 12586510 - 12586403
Alignment:
Q  49 ttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggaggg 148  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||    
T  12586510 ttgatgagcgtagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcacttttggggtttttggaggtggaggg 12586411  T
Q  149 aaagaaaa 156  Q
    ||||||||    
T  12586410 aaagaaaa 12586403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 45246763 - 45246888
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||  ||||||    
T  45246763 tacattacctgttctttgatgcttgatgagcgtggaaacttgtttcttgacgatttgcaatgatttggaatgaagatttttacccaaaatttcacacttt 45246862  T
Q  127 ttgggtttttgaaggtggagggaaag 152  Q
    | | ||||||| ||||||||||||||    
T  45246863 tagagtttttggaggtggagggaaag 45246888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 5534180 - 5534257
Alignment:
Q  121 cactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| || ||  ||||| ||||||| |||||||    
T  5534180 cactttttgggtttttgaaggtggagggaaagaaaatggtgcttggagtttgcactaatgggttttgtacgaaaacag 5534257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 6599370 - 6599486
Alignment:
Q  45 atgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttt-tgggtttttgaaggt- 142  Q
    ||||||||| ||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| |||| || ||| ||||  ||||||||| ||||     
T  6599370 atgcttgataagcatagaaacctgcttcctgacgacttgcaatgatttgaaatgaagatttttaccaaaaaattcgcatttttgggggtttttggaggtg 6599469  T
Q  143 -ggagggaaagaaaatg 158  Q
     | ||||||||||||||    
T  6599470 agtagggaaagaaaatg 6599486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 24904254 - 24904326
Alignment:
Q  21 agatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttg 93  Q
    |||||| ||||||| |||| ||||| | ||||||||| |||||||||||||| ||| | |||  |||||||||    
T  24904254 agatgacacattacttgatttttgacgtttgatgagcgtagaaacttgcttcatgatgttttttaatgatttg 24904326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 13868179 - 13868358
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 117  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||| |||||  |||||||||||||||||| |||||||| ||||||| |||| |    
T  13868179 tttagatgatacattacctaatatttgatgcttgatgagtgtagaaacttacttccccacgatttgcaatgatttgaaatgaagaatttgacccaaaaat 13868278  T
Q  118 ttgcactttttgggtttttgaaggtg--gagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaa 195  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||||| | |||| ||||| |||||| ||||||| ||||    
T  13868279 ttgcactttttgagtttttggaggtggagagggaaagaaaatggtgcttagagtttggactgatgggttttgtaccaaaa 13868358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 32075163 - 32075008
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||| |||||||||| |||| |    
T  32075163 tttagatgatacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgatgatttacaatgatttgggatgaggattttgacccaaaaat 32075064  T
Q  118 ttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatgga 174  Q
    |  ||||||||| || ||  ||||||| ||||| ||||||||||| |||||||||||    
T  32075063 tcacactttttgagtcttaaaaggtgg-gggaatgaaaatggtgcttggagtatgga 32075008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 24626061 - 24626228
Alignment:
Q  45 atgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtgg 144  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||  |||||||||||| ||||||| |||||     
T  24626061 atgcttgatgagcgtagaaacttgcttcatgatgatttgcaatgatttggaatgaagatttttacccaaaaaattgcactttttgtgtttttggaggtgc 24626160  T
Q  145 agggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag-caactctgtgtga 211  Q
    ||||||||||||||||  ||| |||||||||  ||| | |||||| ||||||||  ||||||||||||    
T  24626161 agggaaagaaaatggtttatgaagtatggactaatgagttttgtataaaaacagtaaactctgtgtga 24626228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 20534367 - 20534471
Alignment:
Q  102 attttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaa 201  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||||| ||||||||||||||| ||    
T  20534367 attttgacccaaaatttcgcactttttgggtttttgaaggtggagggaaagaaaatggtgcttgaagtatggaatgatggggtttgtacaaaaacagtaa 20534466  T
Q  202 ctctg 206  Q
    |||||    
T  20534467 ctctg 20534471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 2807162 - 2807338
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgc 121  Q
    |||||||||||||||| | ||||||| |||| |||| ||  |||||||||||| |||||||||||||||||  |||||||||||||||| ||||  |||     
T  2807162 gatgatacattacctgttctttgatgtttgacgagcgtaagaacttgcttcctaacgatttgcaatgatttcaaatgaagattttgacccaaaaaattgt 2807261  T
Q  122 actttttgggtttttgaaggtggagggaaag-aaaatggtgcatggagtatggaccgatgggctttgtacaaaaacag 198  Q
    |||||||||||||| | |||||||||||||| ||||||||||   || ||||||| |  ||| |||||||||||||||    
T  2807262 actttttgggttttag-aggtggagggaaagaaaaatggtgcggtgaatatggactgccgggttttgtacaaaaacag 2807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 22661938 - 22661841
Alignment:
Q  117 tttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||| ||||||| |||||||    
T  22661938 tttgcactttttgcgtttttgaaggtggagggaaagaaaatggtgcttggagtatggactgatgggttttgtacgaaaacagtaactctgcgtgactt 22661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 14189917 - 14189775
Alignment:
Q  21 agatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttg 120  Q
    |||||||| |||||||||| ||| ||||||||||||| ||| ||||| |||||| |||||||||||||||||| |||||||||||||||| ||||  |      
T  14189917 agatgatatattacctgattttttatgcttgatgagcgtagtaactttcttcctaacgatttgcaatgatttgaaatgaagattttgacccaaaaaatca 14189818  T
Q  121 cactttttgggtttttgaaggt--ggagggaaagaaaatggtg 161  Q
    ||||||||| | ||||| ||||  |||||||||||||||||||    
T  14189817 cactttttgagattttggaggtagggagggaaagaaaatggtg 14189775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20532092 - 20532180
Alignment:
Q  18 tttagatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagatttt 106  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||| |||||    
T  20532092 tttagatgatacattacctggtatttgatgcttgatgagcgtagaaacttgcttccatacaatttgcaatgatttggaatgaaaatttt 20532180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 34276538 - 34276417
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||| ||||| | ||||||| |||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||  | ||||    
T  34276538 tacatcacctgttctttgatggttgatgggcgtagaaacttgtttcatgacgatttgcaatgatttggaatgaagatttttacccaaaatttctctcttt 34276439  T
Q  127 ttgggtttttgaaggtggaggg 148  Q
    | ||||||||| ||||||||||    
T  34276438 tggggtttttggaggtggaggg 34276417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 41601191 - 41601078
Alignment:
Q  85 aatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggct 184  Q
    |||||||||| |||| |||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||  |    
T  41601191 aatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaatggtgcttgaagtttggatcgatggatt 41601092  T
Q  185 ttgtacaaaaacag 198  Q
    |||||| |||||||    
T  41601091 ttgtacgaaaacag 41601078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 27188182 - 27188323
Alignment:
Q  21 agatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttg 120  Q
    ||||||||||||||||||| ||| ||| |||||| || | |||| |||||||||||||||| ||||||||||| |||||||||||| ||| ||||  |||    
T  27188182 agatgatacattacctgattttttatgattgatgggcgtggaaatttgcttcctgacgattagcaatgatttgaaatgaagattttaacccaaaaaattg 27188281  T
Q  121 cactttttgggtttttgaaggtg--gagggaaagaaaatggt 160  Q
    || ||||| | |||||| || ||  |||||||||||| ||||    
T  27188282 cattttttagctttttggagttgaagagggaaagaaagtggt 27188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 22661996 - 22661933
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgca 85  Q
    ||||||||| ||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  22661996 gatgatacaatacctaatacttggtgcttgatgagcgtagaaacttgcttcctgacgatttgca 22661933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 23502679 - 23502616
Alignment:
Q  352 tggcaattctgttttaccactagccacctcagcatgccctttctttctc-ttgtttttcctcac 414  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||| ||||    
T  23502679 tggcaattctgttttaccactagccacctcagcattctgtttctttctctttgtttttcttcac 23502616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 33228371 - 33228335
Alignment:
Q  120 gcactttttgggtttttgaaggtggagggaaagaaaa 156  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  33228371 gcactttttgggtttttggaggtggaggaaaagaaaa 33228335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 2196 - 2003
Alignment:
Q  22 gatgatacattacctgatatttgatgcttgatg-agcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttg 120  Q
    ||||||||| ||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||   ||||  ||||| ||| ||||  | |    
T  2196 gatgatacaatacctgatatttggtggttgatggagcgtagaaacttgcttcctgacgatttgcaatgatttaagatgagcatttttacccaaaaaatcg 2097  T
Q  121 cactttttgggtttttgaaggtggagggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaacagcaactctgtgtgactt 214  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||| |||||| |||| || ||||||| ||||||| |||||||    
T  2096 cactttttgggtttttaaaggtggagggaaagaaaatggtgtttggagtatggactgatgggttttgcacgaaaacagtaactctgcgtgactt 2003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 31522355 - 31522484
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    ||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  31522355 tacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaattaagatttttacccaaaatttcgcacttt 31522454  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||||||||||||    
T  31522455 tggggtttttggaggtggagggaaagaaaa 31522484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 13543661 - 13543798
Alignment:
Q  24 tgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcac 123  Q
    ||||| ||||||| |||||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||| |||||||||||| ||||  ||||||    
T  13543661 tgatagattacctaatatttgatgcttgatgagcgtagaagcttgcttcctaccgatttgcaatgatttggaataaagattttgacc-aaaaaattgcac 13543759  T
Q  124 tttttgggtttttgaaggtggagggaaagaaaatggtgc 162  Q
     ||||||||||||| ||||||||||||||||||||||||    
T  13543760 cttttgggtttttggaggtggagggaaagaaaatggtgc 13543798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 32275553 - 32275682
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    |||||||| || | ||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||    
T  32275553 tacattacatgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaaagatttggaatgaagatttttacccaaaatttcgcacttt 32275652  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||| ||||||||    
T  32275653 tggggtttttggaggtggaggaaaagaaaa 32275682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 8518615 - 8518467
Alignment:
Q  49 ttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaaggtg--gag 146  Q
    ||||||| | |||||||||||||||  ||||||  |||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||  |||||  |||    
T  8518615 ttgatgaacgtagaaacttgcttcccaacgattaacaatgatttgaaatgatgattttgacataaaaatttgcactttttgggtttttagaggtgaagag 8518516  T
Q  147 ggaaagaaaatggtgcatggagtatggaccgatgggctttgtacaaaaa 195  Q
    ||||| |||||||||| || |||  ||||  ||||| ||||||| ||||    
T  8518515 ggaaaaaaaatggtgcttgaagttgggactaatgggttttgtaccaaaa 8518467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 4321590 - 4321632
Alignment:
Q  85 aatgatttggaatgaagattttgacctaaaattttgcactttt 127  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  4321590 aatgatttggaatgaagatttttacccaaaattttgcactttt 4321632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 7452450 - 7452489
Alignment:
Q  122 actttttgggtttttgaaggtggagggaaagaaaatggtg 161  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  7452450 acttttttggtttttggaggtggagggaaagaaaatggtg 7452489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 7452361 - 7452410
Alignment:
Q  24 tgatacattacctgatatttgatgcttgatgagcctagaaacttgcttcc 73  Q
    |||||||||||||||||||||||| ||||||||  |||||| | ||||||    
T  7452361 tgatacattacctgatatttgatgtttgatgagtgtagaaattagcttcc 7452410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 38133 - 38248
Alignment:
Q  41 tttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcactttttgggtttttgaag 140  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||    
T  38133 tttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaaatttgcactttttggctttttggag 38232  T
Q  141 gtggagggaaagaaaa 156  Q
    ||||||||||||||||    
T  38233 gtggagggaaagaaaa 38248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 1772 - 1643
Alignment:
Q  27 tacattacctgatatttgatgcttgatgagcctagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 126  Q
    |||||||| || | || |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||  || |||| || |||||||    
T  1772 tacattacatgttcttcgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaagatttttgcccaaaaattcgcacttt 1673  T
Q  127 ttgggtttttgaaggtggagggaaagaaaa 156  Q
    | ||||||||| ||||||||||||||||||    
T  1672 tggggtttttggaggtggagggaaagaaaa 1643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University