View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12926_high_5 (Length: 445)

Name: NF12926_high_5
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12926_high_5
NF12926_high_5
[»] chr8 (3 HSPs)
chr8 (4-429)||(2369178-2369600)
chr8 (164-321)||(36697896-36698053)
chr8 (187-291)||(20104598-20104701)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 429
Target Start/End: Complemental strand, 2369600 - 2369178
Alignment:
Q  4 atgtcgaagaatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2369600 atgttgaataatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac 2369501  T
Q  104 aagctgttgcaaattaattgaattcactgctcataatacaaattaatcacaattatgattaaaa-gttgatacaagaaaccaagatgagagatgagattg 202  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2369500 aagctgttgcaaattaattgaattcaatgctcataatacaaattaatcacaattatgattaaaaagttgatacaagaaaccaagatgagagatgagattg 2369401  T
Q  203 tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||    
T  2369400 tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatatggaggcaaaatagattatgataatgggttccagaaat 2369301  T
Q  303 tggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagagaatccaaacagacctaaataaattaaagttaagggc-t 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||| |    
T  2369300 tggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagacaatccaaacagacctaaa-----taaagttaagggctt 2369206  T
Q  402 tcatatacatacaacaataattgttcat 429  Q
    ||||||||||||||||||||||||||||    
T  2369205 tcatatacatacaacaataattgttcat 2369178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 36698053 - 36697896
Alignment:
Q  164 aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggat 263  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||    
T  36698053 aaaaattgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaataacatggaggat 36697954  T
Q  264 acggaggcaaaatagattctgataatgggttccaaaaattggccgtgattgagaatga 321  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36697953 atggaggcaaaatagattctgataatgggttccagaaattggccgtgattgagaatga 36697896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 20104701 - 20104598
Alignment:
Q  187 atgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgat 286  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| |||||||| |||||| |||||||||  |||    
T  20104701 atgagagatgtcattgtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaataaca-tggggatatggaggccaaatagatttcgat 20104603  T
Q  287 aatgg 291  Q
    |||||    
T  20104602 aatgg 20104598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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