View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12926_high_7 (Length: 340)
Name: NF12926_high_7
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12926_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 3267080 - 3267401
Alignment:
| Q |
1 |
ggtcaccaaacaaaccccagttagaatcacagctgcagcaacgatggcaacaatagcagacacactgagaagtttagtcttcccaggaggtgaagatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3267080 |
ggtcaccaaacaaaccccagttagaatcacagctgcagcaacaatggcaacaatagcagacacactgagaagtttagtcttcccaggaggtgaagatgat |
3267179 |
T |
|
| Q |
101 |
gatcttgttccgtttgcggagcaagtgatgtctaaaggggcaccgcagagaaaaggattattggaaaatgcaggtgcaccaaaatgctgtattgttgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3267180 |
gatcttgttccgtttgcggagcaagtgatgtctaaaggggcaccgcagagaaaaggattattggaaaatgcaggtgcaccgaaatgctgtattgttgcaa |
3267279 |
T |
|
| Q |
201 |
tatcaggaatgacaccagagagattgttgaatgagagatcaaaatgtgtcaagttatttaaatctccaagtgaaggagggattgaaccagaaaatgaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3267280 |
tatcaggaatgacaccagagagattgttgaatgagagatcaaaatgtgtcaagttatttaaatctccaagtgaaggagggattgaaccagaaaatgaatt |
3267379 |
T |
|
| Q |
301 |
atgtgatagatctaggaattgg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3267380 |
atgtgatagatctaggaattgg |
3267401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University