View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12926_low_1 (Length: 775)

Name: NF12926_low_1
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12926_low_1
NF12926_low_1
[»] chr2 (14 HSPs)
chr2 (253-761)||(23785134-23785637)
chr2 (4-253)||(23784804-23785053)
chr2 (430-757)||(23795294-23795617)
chr2 (9-253)||(23796267-23796511)
chr2 (4-253)||(23767074-23767323)
chr2 (430-761)||(23766095-23766422)
chr2 (93-204)||(30383595-30383706)
chr2 (93-200)||(30393750-30393857)
chr2 (253-361)||(23766769-23766877)
chr2 (253-361)||(23795962-23796070)
chr2 (385-423)||(15275998-15276036)
chr2 (385-423)||(22355126-22355164)
chr2 (385-423)||(34107317-34107355)
chr2 (395-464)||(44187757-44187827)
[»] chr5 (2 HSPs)
chr5 (16-200)||(41628766-41628950)
chr5 (364-412)||(3350786-3350835)
[»] chr8 (1 HSPs)
chr8 (386-423)||(15187372-15187409)
[»] chr4 (1 HSPs)
chr4 (366-411)||(26004655-26004700)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 253 - 761
Target Start/End: Original strand, 23785134 - 23785637
Alignment:
Q  253 aagtttttacgtaagttttttatataaagctaaactatcccaacaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23785134 aagtttttacgtaagttttttatataaagctaaactatcccaacaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgt 23785233  T
Q  353 cccaagccatcttgacattgcataatatatacggggttgagattcgaactccaaacaccccacttattcacttaatgataaatttttagccactaaacta 452  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23785234 cccaagccatcttgacattgcataatatatacggggttaagattcgaactccagacaccccacttattcacttaatgataaatttttagccactaaacta 23785333  T
Q  453 cttgacc-taaaacgagataaaagtcgaaaatcttagtaaaaacagtcaataaactttgacagacaaacaaattagtgatagattttctctatcacttca 551  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23785334 cttgaccaaaaaaagagataaaagtcgaaaatcttagtaaaaacagtcaataaactttgacagacaaacaaatcagtgatagattttctctatcacttca 23785433  T
Q  552 aatcaatatcaatattgtagtagtaagattgagtttgnnnnnnnnnnnntaccatgagtttgaacagcgtgatgaatgtaaggagcaacacgtggtgcaa 651  Q
    |      ||||||||||||||||||||||||||||||            ||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  23785434 a------atcaatattgtagtagtaagattgagtttgaaaaaagaaaaataccatgagtttgaacagcatgatgaatgtaaggagcgacacgtggcgcaa 23785527  T
Q  652 tatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctccaagcaaaagtctataaggattcccttgaag 751  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23785528 tatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctccaagcaaaagtctataagggttcccttgaag 23785627  T
Q  752 accttgttct 761  Q
     |||||||||    
T  23785628 gccttgttct 23785637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 23784804 - 23785053
Alignment:
Q  4 gggtagattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784804 gggttgattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact 23784903  T
Q  104 cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784904 cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa 23785003  T
Q  204 tgggtggaatattagtgaagatcaattgtaccataacatcacttcaatga 253  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23785004 tgggtggaatattagtgaagatcaattgtaccataacatgacttcaatga 23785053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 430 - 757
Target Start/End: Complemental strand, 23795617 - 23795294
Alignment:
Q  430 ataaatttttagccactaaactacttgacctaaaac-gagataaaagtcgaaaatctt-agtaaaaacagtcaataaactttgacagacaaacaaattag 527  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23795617 ataaatttttagccactaaactacttgaccaaaaaaagagataaaagtcgaaaatctttagtaaaaacagtcaataaactttgacagacaaccaaattag 23795518  T
Q  528 tgatagattttctctatcacttcaaatcaatatcaatattgtagtagtaagattgagtttgnnnnnnnnnnnntaccatgagtttgaacagcgtgatgaa 627  Q
    |||||||||||||||||| | ||||||||||||      ||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  23795517 tgatagattttctctatcgcgtcaaatcaatat------tgtagtagtaagattgagtttgaaaaaagaaaaataccatgagtttgaacagcgtgatgaa 23795424  T
Q  628 tgtaaggagcaacacgtggtgcaatatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctccaagcaa 727  Q
    |||||||||| |||||||| ||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23795423 tgtaaggagcgacacgtggcgcaatatcatccgaaaaaatcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctccaagcaa 23795324  T
Q  728 aagtctataaggattcccttgaagaccttg 757  Q
    |||||||||||||||||| ||||| |||||    
T  23795323 aagtctataaggattcccatgaaggccttg 23795294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 23796511 - 23796267
Alignment:
Q  9 gattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagac 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23796511 gattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagat 23796412  T
Q  109 atcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaatgggt 208  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  23796411 atcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaatgggt 23796312  T
Q  209 ggaatattagtgaagatcaattgtaccataacatcacttcaatga 253  Q
    ||||||||||||||||||||||||||||   ||| ||||||||||    
T  23796311 ggaatattagtgaagatcaattgtaccacggcatgacttcaatga 23796267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 23767323 - 23767074
Alignment:
Q  4 gggtagattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact 103  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767323 gggttgattatccttctatgcttggtccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact 23767224  T
Q  104 cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa 203  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  23767223 cagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaa 23767124  T
Q  204 tgggtggaatattagtgaagatcaattgtaccataacatcacttcaatga 253  Q
    |||||||||||||||||||||||||||||||||   ||| ||||||||||    
T  23767123 tgggtggaatattagtgaagatcaattgtaccacggcatgacttcaatga 23767074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 430 - 761
Target Start/End: Complemental strand, 23766422 - 23766095
Alignment:
Q  430 ataaatttttagccactaaactacttgacctaaaacg-agataaaagtcgaaaatctt-agtaaaaacagtcaataaactttgacagacaaacaaattag 527  Q
    |||||||||||||||||||||||||||| | ||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23766422 ataaatttttagccactaaactacttgatcaaaaaaatagataaaagtcgaaaatctttagtaaaaacagtcaataaactttgacagacaaacaaattag 23766323  T
Q  528 tgatagattttctctatcacttcaaatcaatatcaatattgtagtagtaagattgagtttgnnnnnnnnnnnntaccatgagtttgaacagcgtgatgaa 627  Q
    |||||| ||||||||||| | ||||||||||||      ||||||||||||||||||||||            ||||||||||||||||||| || ||||    
T  23766322 tgataggttttctctatcgcgtcaaatcaatat------tgtagtagtaagattgagtttgaaaaaagaaaaataccatgagtttgaacagcatggtgaa 23766229  T
Q  628 tgtaaggagcaacacgtggtgcaatatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctccaagcaa 727  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23766228 tgtaaggagcgacacgtggcgcaatatcatccgacagattcatgggtttggattgaactttcttttgcattacaaaataatcctttgcatctccaagcaa 23766129  T
Q  728 aagtctataaggattcccttgaagaccttgttct 761  Q
    |||||||||||| ||||||||||| |||||||||    
T  23766128 aagtctataagggttcccttgaaggccttgttct 23766095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 30383706 - 30383595
Alignment:
Q  93 ctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttc 192  Q
    ||||||||| |||||||||||||| || || ||| ||||||| ||||||||  | | | |||||| |||||| ||||||||||||||| |||| || |||    
T  30383706 ctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctgtcaaagtcacccttggttttattccaaaccaaatataagaattcttc 30383607  T
Q  193 cctgcatacaat 204  Q
    ||||||||||||    
T  30383606 cctgcatacaat 30383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 30393857 - 30393750
Alignment:
Q  93 ctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttc 192  Q
    ||||||||| |||||||| ||||| ||||| ||| ||||||| ||||||||  ||||| | | || |||||| |||||||||||||||||||| || ||     
T  30393857 ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt 30393758  T
Q  193 cctgcata 200  Q
    ||||||||    
T  30393757 cctgcata 30393750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 23766877 - 23766769
Alignment:
Q  253 aagtttttacgtaagttttttatataaagctaaactatcccaacaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgt 352  Q
    ||||||||| | ||||||||| |||||| ||||||||| ||||| |||||||||   |||||||||   ||| ||||||| |   |||||||||||| ||    
T  23766877 aagtttttatgcaagttttttttataaaactaaactattccaaccaaattcatccagaagaatcgaatctgaaaccttgatgagaaacacacttcaaggt 23766778  T
Q  353 cccaagcca 361  Q
    |||||||||    
T  23766777 cccaagcca 23766769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 23796070 - 23795962
Alignment:
Q  253 aagtttttacgtaagttttttatataaagctaaactatcccaacaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgt 352  Q
    ||||||||| | ||||||||| |||||| ||||||||| ||||| |||||||||   |||||||||   ||| ||||||| |   |||||||||||| ||    
T  23796070 aagtttttatgcaagttttttttataaaactaaactattccaaccaaattcatccagaagaatcgaatctgaaaccttgatgagaaacacacttcaaggt 23795971  T
Q  353 cccaagcca 361  Q
    |||||||||    
T  23795970 cccaagcca 23795962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 15276036 - 15275998
Alignment:
Q  385 ggggttgagattcgaactccaaacaccccacttattcac 423  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  15276036 ggggttgaggttcgaaccccaaacaccccacttattcac 15275998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 22355126 - 22355164
Alignment:
Q  385 ggggttgagattcgaactccaaacaccccacttattcac 423  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  22355126 ggggttgagtttcgaactccagacaccccacttattcac 22355164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 34107317 - 34107355
Alignment:
Q  385 ggggttgagattcgaactccaaacaccccacttattcac 423  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  34107317 ggggttgaggttcgaactccagacaccccacttattcac 34107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 44187757 - 44187827
Alignment:
Q  395 ttcgaactccaaacaccccacttattcacttaatga-taaatttttagccactaaactacttgacctaaaa 464  Q
    ||||||| ||| ||||||||||||||||||| |  | | ||||||||||||||||||||| ||||| ||||    
T  44187757 ttcgaaccccagacaccccacttattcactttaaaagtgaatttttagccactaaactacctgaccaaaaa 44187827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 41628766 - 41628950
Alignment:
Q  16 cttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagacatcttgt 115  Q
    |||||||||||||||||||||||||| || ||  |  ||||||| | |  || |||||| | || |||||  | |  |||||| || ||||| || ||||    
T  41628766 cttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttggaaagtcagagatattgt 41628865  T
Q  116 tgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcata 200  Q
    | ||||| ||| | ||||| ||||||||  |||||||||||| ||||||  |||||||||| |||||||| || |||||| ||||    
T  41628866 tcaatacatctatgatttgctcaggttctgtgagaatcacccttggttttgttccaaaccacataaaagaattcttccctacata 41628950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 3350835 - 3350786
Alignment:
Q  364 ttgacattgcataatatata-cggggttgagattcgaactccaaacaccc 412  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||||||||    
T  3350835 ttgacattgcataatatatatcggggttgaagttcgaaccccaaacaccc 3350786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 15187409 - 15187372
Alignment:
Q  386 gggttgagattcgaactccaaacaccccacttattcac 423  Q
    |||||| | |||||||||||||||||||||||||||||    
T  15187409 gggttggggttcgaactccaaacaccccacttattcac 15187372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 26004655 - 26004700
Alignment:
Q  366 gacattgcataatatatacggggttgagattcgaactccaaacacc 411  Q
    |||| |||||||||||| |  |||||||||||||||||||||||||    
T  26004655 gacagtgcataatatatgcaaggttgagattcgaactccaaacacc 26004700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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