View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12926_low_2 (Length: 630)

Name: NF12926_low_2
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12926_low_2
NF12926_low_2
[»] chr5 (11 HSPs)
chr5 (1-611)||(32556962-32557572)
chr5 (390-578)||(32710575-32710763)
chr5 (385-578)||(32763327-32763523)
chr5 (395-566)||(25477756-25477927)
chr5 (408-552)||(32748123-32748267)
chr5 (387-548)||(32768361-32768521)
chr5 (385-553)||(28475217-28475385)
chr5 (390-544)||(32651304-32651458)
chr5 (164-346)||(32744266-32744449)
chr5 (408-550)||(32749643-32749784)
chr5 (502-552)||(32858865-32858915)
[»] chr1 (2 HSPs)
chr1 (386-566)||(17583835-17584015)
chr1 (385-531)||(17592675-17592821)
[»] chr7 (2 HSPs)
chr7 (404-552)||(37577566-37577714)
chr7 (398-484)||(7969384-7969470)
[»] scaffold0548 (1 HSPs)
scaffold0548 (299-346)||(10614-10661)
[»] chr3 (1 HSPs)
chr3 (299-346)||(15102343-15102390)


Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 32556962 - 32557572
Alignment:
Q  1 atacaacaaaggctagctaacaatctgtcttggctttcacctgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacannnnnnnnaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  32556962 atacaacaaaggctagctaacaatctgtattggctttcacccgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacattttttttaa 32557061  T
Q  101 acataagggtggatttaaataacttcattcttttatacatcggggctgcaataagctacagttagactatactgcaggagtcattacatctatctattat 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557062 acataagggtggatttaaataacttcattcttttatacattggggctgcaataagctacagttagactatactgcaggagtcattacatctatctattat 32557161  T
Q  201 atcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaacaaa 300  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557162 atcaaaataaactacaatttccgctaatgtatgtttcttcatttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaacaaa 32557261  T
Q  301 aaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacatctaggggaggcggaggatgag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32557262 aaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacttctaggggaggcggaggatgag 32557361  T
Q  401 gtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557362 gtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatc 32557461  T
Q  501 gtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttccacaaccatgtgctatgaatattt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557462 gtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttccacaaccatgtgctatgaatattt 32557561  T
Q  601 gcatctgcacc 611  Q
    |||||||||||    
T  32557562 gcatctgcacc 32557572  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 390 - 578
Target Start/End: Complemental strand, 32710763 - 32710575
Alignment:
Q  390 cggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggt 489  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||| || | |||| |||||  |||| ||||||| ||||||| ||| || |    
T  32710763 cggaggatgaggttgagggttgacttctcttggatgttgtaattggcaagggtctgacagtcagctagttccttactggcaaagatcagacattgctgat 32710664  T
Q  490 gcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttcca 578  Q
     |||||||||  ||||||| ||  |||||||  ||||||  |||||||| |||| ||||||||||||||||| |||| || ||||||||    
T  32710663 ccactgggattctttccttctctcgaatcttcgccttcaagtttgctattgtgtatgaactctccaccttcagggggatcgtctttcca 32710575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 385 - 578
Target Start/End: Complemental strand, 32763523 - 32763327
Alignment:
Q  385 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagctta---ttggcaaacatcagacg 481  Q
    ||||||||| || |||||||| |||||  ||||||||||||||||||| |||||||||| || |||| ||||   |||||   | | | |  ||||||||    
T  32763523 ggaggcggatgaggaggtggatggttgaattctcttggatgttgtaattggcaagggtaaggttgtcctctaactgcttaccgtcgtcgatgatcagacg 32763424  T
Q  482 ttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttcca 578  Q
    ||| | ||||| |||||||  |||||||||||||||||| | |||||||||| |||| |||||||||||||| ||| |||||||| |||||||||||    
T  32763423 ttgctcgtgcattgggatcccttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatcatctttcca 32763327  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 566
Target Start/End: Complemental strand, 25477927 - 25477756
Alignment:
Q  395 gatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcact 494  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| ||| |||| ||| |||||| |||||  || ||| ||||||||||| | || ||||    
T  25477927 gatgaggtggatggttgacttctcttggatgttgtaattggcaatggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcact 25477828  T
Q  495 gggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggg 566  Q
     ||  | |||||||||||| |||||| ||||||||| |  ||||||||||||||||||  ||| ||||||||    
T  25477827 tggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccctcaagggg 25477756  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 552
Target Start/End: Complemental strand, 32748267 - 32748123
Alignment:
Q  408 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcct 507  Q
    |||| |||||||||||||||||||  ||||||||| |||| ||  |||||| |||| |||| ||| | ||||||||||||||| || ||||||  |||||    
T  32748267 gttgacttctcttggatgttgtaactggcaagggtctggcggttctctagttgcttcttggaaaagaacagacgttgttggtggacagggatcccttcct 32748168  T
Q  508 tgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 552  Q
    ||||  ||| ||| | |||||||||   |||||||||||||||||    
T  32748167 tgtcctgaacctttttcttcacattgagtatcgtgtctgaactct 32748123  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 548
Target Start/End: Complemental strand, 32768521 - 32768361
Alignment:
Q  387 aggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgtt 486  Q
    ||||||| || || ||| ||| ||| |||||||||||||||| ||| ||||||||| | | |||||||| || || ||  |||||| |||| ||||||||    
T  32768521 aggcggatgacgacgtgcaggattgacttctcttggatgttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgtt 32768422  T
Q  487 ggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaa 548  Q
    |||| |||||||||  |||||||| || || ||| | |||||||||  ||||||||||||||    
T  32768421 ggtgtactgggatcccttccttgt-aaaaaacttcttcttcacattaactatcgtgtctgaa 32768361  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 385 - 553
Target Start/End: Complemental strand, 28475385 - 28475217
Alignment:
Q  385 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 484  Q
    ||||||||||||  ||| ||| |||||  ||||||||||||||||||  |||||||||| |  |||| |||||| |||||  | |    || ||||||||    
T  28475385 ggaggcggaggacaaggaggatggttgagttctcttggatgttgtaactggcaagggtaagattgtcctctagttgcttaccgtcgttgattagacgttg 28475286  T
Q  485 ttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctc 553  Q
     | ||| | |||||||  |||||||||||||||||| | ||||||||   |||||||||||||||||||    
T  28475285 ctcgtgtattgggatcccttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctc 28475217  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 544
Target Start/End: Original strand, 32651304 - 32651458
Alignment:
Q  390 cggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggt 489  Q
    ||||| |||||||| | ||||| ||| ||||||||| |||||| ||||||| |  ||| ||| |||||| | |||   ||||| |||| |||||| | ||    
T  32651304 cggagaatgaggtgaatggttgacttatcttggatgatgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgt 32651403  T
Q  490 gcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtc 544  Q
     ||||||| || |||||| ||||| |||||| |||||||||||| |||| |||||    
T  32651404 acactggggtcttttcctcgtcaacaatcttctccttcacattttctatggtgtc 32651458  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 346
Target Start/End: Complemental strand, 32744449 - 32744266
Alignment:
Q  164 agactatactgcaggagtcattacatctatctattatatcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatca-----tag 258  Q
    |||||| ||| || |||||||||||||||||||| | |   ||||| |||||| ||||||||||||| |||||||| | |||||||| | ||     |||    
T  32744449 agactagactacaagagtcattacatctatctataagag--aaatagactacagtttcagctaatgtgtgtttcttaa-ttgcagaaaaacaaacaatag 32744353  T
Q  259 caagcaaaaagatcattagagagctcaagcaaaataaacaaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 346  Q
    | ||||||| |||||||  | |||||||  ||||||||  ||||| ||||| |||  ||||||||||||||| ||| |||||||||||    
T  32744352 ccagcaaaa-gatcattccaaagctcaataaaaataaaataaaaagaagcaaaagttaaatccttgaacatgggaagcaaaagtcaaa 32744266  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 550
Target Start/End: Complemental strand, 32749784 - 32749643
Alignment:
Q  408 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcct 507  Q
    |||| ||||||||||||| |||||| ||||||| | ||||  || |||| |||||||  | |||| |  ||||| ||||||||||||||||||| ||||     
T  32749784 gttgacttctcttggatgctgtaattggcaaggatttggcgttcctctattagcttaccgtcaaagaatagacgctgttggtgcactgggatcgcttcca 32749685  T
Q  508 tgtcaagaatcttatccttcacatttgctatcgtgtctgaact 550  Q
    | |||  | |||| | ||||||||| | |||||||||||||||    
T  32749684 tttcataattcttcttcttcacattag-tatcgtgtctgaact 32749643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 32858915 - 32858865
Alignment:
Q  502 tttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 552  Q
    ||||||||||||||||| | |||||||||||  ||||||||||||||||||    
T  32858915 tttccttgtcaagaatcatctccttcacattgactatcgtgtctgaactct 32858865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 386 - 566
Target Start/End: Complemental strand, 17584015 - 17583835
Alignment:
Q  386 gaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgt 485  Q
    ||||||||||  ||| || | ||||| |||||||||||||||||||| |||||||||  || |||| |||||| |||||  | |||| |||||||||||     
T  17584015 gaggcggaggcagagatgaatggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgc 17583916  T
Q  486 tggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggg 566  Q
    ||||||||||  ||   |||||||||||||||||| | |||||||||   |||||||||||||||||||||| ||| ||||    
T  17583915 tggtgcactgcaatatcttccttgtcaagaatcttcttcttcacattcattatcgtgtctgaactctccaccctcaggggg 17583835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 531
Target Start/End: Complemental strand, 17592821 - 17592675
Alignment:
Q  385 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 484  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||| | |||||||  ||   |||||||||| ||||  | |||| |||| ||||||    
T  17592821 ggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccaaagatcaaacgttg 17592722  T
Q  485 ttggtgcactgggatcgtttccttgtcaagaatcttatccttcacat 531  Q
     |||||||| |||||  ||||||||||||||||||| | ||||||||    
T  17592721 ctggtgcaccgggatattttccttgtcaagaatcttcttcttcacat 17592675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 552
Target Start/End: Complemental strand, 37577714 - 37577566
Alignment:
Q  404 gagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtt 503  Q
    |||||||| |||||||||||||| ||||| |||||||||  |||| | |||||||  ||||  |||||| |||||||||||    |||| |||||||  |    
T  37577714 gagggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcatatgcattgggatccct 37577615  T
Q  504 tccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 552  Q
    || |||||||||||||| ||||||||||  |||||||||||||||||||    
T  37577614 tcattgtcaagaatcttctccttcacatcggctatcgtgtctgaactct 37577566  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 7969384 - 7969470
Alignment:
Q  398 gaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 484  Q
    |||||||||||||| | |||||||||||||| ||| ||||| |||  |||||||||||| | ||||| ||||||| |||||||||||    
T  7969384 gaggtggagggttgacctctcttggatgttgcaattggcaatggtcaggctgtcatctaattgcttactggcaaagatcagacgttg 7969470  T

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Target: scaffold0548 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 10661 - 10614
Alignment:
Q  299 aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 346  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||    
T  10661 aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa 10614  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 15102343 - 15102390
Alignment:
Q  299 aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 346  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||    
T  15102343 aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa 15102390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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