View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12926_low_5 (Length: 445)
Name: NF12926_low_5
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12926_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 429
Target Start/End: Complemental strand, 2369600 - 2369178
Alignment:
| Q |
4 |
atgtcgaagaatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac |
103 |
Q |
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| T |
2369600 |
atgttgaataatatgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagac |
2369501 |
T |
|
| Q |
104 |
aagctgttgcaaattaattgaattcactgctcataatacaaattaatcacaattatgattaaaa-gttgatacaagaaaccaagatgagagatgagattg |
202 |
Q |
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| T |
2369500 |
aagctgttgcaaattaattgaattcaatgctcataatacaaattaatcacaattatgattaaaaagttgatacaagaaaccaagatgagagatgagattg |
2369401 |
T |
|
| Q |
203 |
tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |
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| T |
2369400 |
tgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatatggaggcaaaatagattatgataatgggttccagaaat |
2369301 |
T |
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| Q |
303 |
tggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagagaatccaaacagacctaaataaattaaagttaagggc-t |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |
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| T |
2369300 |
tggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagacaatccaaacagacctaaa-----taaagttaagggctt |
2369206 |
T |
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| Q |
402 |
tcatatacatacaacaataattgttcat |
429 |
Q |
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| T |
2369205 |
tcatatacatacaacaataattgttcat |
2369178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 36698053 - 36697896
Alignment:
| Q |
164 |
aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggat |
263 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
36698053 |
aaaaattgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaataacatggaggat |
36697954 |
T |
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| Q |
264 |
acggaggcaaaatagattctgataatgggttccaaaaattggccgtgattgagaatga |
321 |
Q |
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| T |
36697953 |
atggaggcaaaatagattctgataatgggttccagaaattggccgtgattgagaatga |
36697896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 20104701 - 20104598
Alignment:
| Q |
187 |
atgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgat |
286 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| |||||||| |||||| ||||||||| ||| |
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| T |
20104701 |
atgagagatgtcattgtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaataaca-tggggatatggaggccaaatagatttcgat |
20104603 |
T |
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| Q |
287 |
aatgg |
291 |
Q |
| |
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||||| |
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|
| T |
20104602 |
aatgg |
20104598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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