View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12926_low_6 (Length: 420)
Name: NF12926_low_6
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12926_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 5414151 - 5413760
Alignment:
| Q |
10 |
gcagagaccgtagtactgatagatctgaaccatctcaggtgcacgagtctgagctccaaccccaacaacaccatgttgaggaggaggatgatgattcaga |
109 |
Q |
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| T |
5414151 |
gcagagaccgtagtactgatagatctgaaccatctcaggtgcacgagtatgagctccaaccccaacaacaccatgttgaggaggaggatgatgattcaga |
5414052 |
T |
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| Q |
110 |
taattcagaggaagaggcgaatgacgatgatgagcacccacaacatgtggagaaggagtcacaaccgctgaataccaatcctggtggcccaggtgcatgt |
209 |
Q |
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| T |
5414051 |
taattcagaggaagaggcgaatgacgatgatgagcacccacaatatgtggagaaggagtcacaactgctgaataccaatcctggtggcccaggtgcatgt |
5413952 |
T |
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| Q |
210 |
ttgctggagtagtaagattcttcaacttatattttttgtattgtgttttacttatttatgtaaaccgatannnnnnngtttgtatcaatggcgtaacaat |
309 |
Q |
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| T |
5413951 |
ttgctggagtagtaagattcttcaacttatattttttgtactgtgttttacttatttatgtaaaccgatatttttttgtttgtatcaatggcgtaacaat |
5413852 |
T |
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| Q |
310 |
ttaaaatctgtgaacaacgagaagaagttgaaggctatacgtgattcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtaca |
401 |
Q |
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| T |
5413851 |
ttaaaatgtgtgaacaacgagaagaagttgaaggctatacgtgattcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtaca |
5413760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 40570143 - 40570215
Alignment:
| Q |
18 |
cgtagtactgatagatctgaaccatctcaggtgcacgagtctgagctccaaccccaacaacaccatgttgagg |
90 |
Q |
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| T |
40570143 |
cgtagtaccgatggatctggaccatctctagtgcacgagactgaacccgagccccaacaacaccgtgttgagg |
40570215 |
T |
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