View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12926_low_8 (Length: 277)
Name: NF12926_low_8
Description: NF12926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12926_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 46442064 - 46441788
Alignment:
| Q |
1 |
tcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgcttcccgataagaatgacttatcgttattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46442064 |
tcatcataaactattaaatttgtgctactacgacatccaatattagcaagtccatctgcacacatgttcgcttcccgataagaatgacttatcgttattt |
46441965 |
T |
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| Q |
101 |
cccgctcacgctccattagttgccgaattttctgcactggtctccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46441964 |
cccgctcacgctccattagttgccgaattttctgcactggtctccaaccattggcactaacacaccctttcttaatactcatgaatcatgataactgctt |
46441865 |
T |
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| Q |
201 |
gggaatcaatacacaactccagtctccaccgccttgaatcttcgatcaatcaccatctgaagcccaagcaaaactcc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46441864 |
gggaatcaatacacaactccagtctccaccgccttgaatcctcgatcaatcaccatctgaagcccaagcaaaactcc |
46441788 |
T |
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