View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12927_high_1 (Length: 535)
Name: NF12927_high_1
Description: NF12927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12927_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 24 - 524
Target Start/End: Complemental strand, 41986255 - 41985754
Alignment:
| Q |
24 |
ttgggaacctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgcatatggaactgctccaggagagatttgaattccattacttgaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41986255 |
ttgggaacctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgcat--ggaactgctccaggagagatttgaattccattacttgaa |
41986158 |
T |
|
| Q |
124 |
cttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtgccatgggaaaaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41986157 |
cttacaagatgaagcttttaaacatgcaatagaaaaaaaggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtaccatgggaaaaat |
41986058 |
T |
|
| Q |
224 |
cctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcatgtcaacgtactttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41986057 |
cctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcgtgtcaacgtactttc |
41985958 |
T |
|
| Q |
324 |
tagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttattggctgaata |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985957 |
tagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttattggctgaata |
41985858 |
T |
|
| Q |
424 |
tgtggatggaggggacatgaaattcctggtagagagtgagcgtg---agttgttgctagtagacatatatgactctcattgttttggtttccctggtgat |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41985857 |
tgtggatggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaa |
41985758 |
T |
|
| Q |
521 |
gatg |
524 |
Q |
| |
|
|||| |
|
|
| T |
41985757 |
gatg |
41985754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 190 - 524
Target Start/End: Complemental strand, 41981317 - 41980980
Alignment:
| Q |
190 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgt |
289 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| || ||||| ||||| | |||||||||| || ||||||| ||||||| | ||| | | ||||| || |
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| T |
41981317 |
aaaggtagttgctgtcacatgccaaggggaa---cctcttgctctcggcacattgaaccatgatggccatccaatactgtttcgttgtcacgaagagcgt |
41981221 |
T |
|
| Q |
290 |
tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg |
389 |
Q |
| |
|
||||||||||| || ||||||| || |||| ||||||||| || |||||| | | ||||||| || |||||| ||| ||||| |||| ||| |
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|
| T |
41981220 |
tggacgccgatgccccatatgtcaatgtgttttcaagacatctgtgtatttaaaaagagattttgtgtggtcaataaaggtggtcggacatttgcgattg |
41981121 |
T |
|
| Q |
390 |
gaccggactatagtgtcgagttattggctgaatatgtgg---atggagg---ggacatgaaattcctggtagagagtgagcgtgagttgttgctagtaga |
483 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| |||| || |||||||| || |
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|
| T |
41981120 |
gaccagactatagtgtccagttagtggctgaatatttggtgtatggaggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtgga |
41981021 |
T |
|
| Q |
484 |
catatatgactctcattgttttggtttccctggtgatgatg |
524 |
Q |
| |
|
||| ||| ||||||||||| |||| ||||||||||| |||| |
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|
| T |
41981020 |
catttatcactctcattgtgttgggttccctggtgaagatg |
41980980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 96 - 519
Target Start/End: Original strand, 13170240 - 13170669
Alignment:
| Q |
96 |
aggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggt |
195 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||| |||||||||||| |
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|
| T |
13170240 |
aggatagatttaaattccgttacttgaacttactagatgaagcttttgaacatgcagcagaaaaacagaaaatggaaaataaggcaaggggaataaaggt |
13170339 |
T |
|
| Q |
196 |
tgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctg------ccatccgctactgttccattgccgcaaagagtgt |
289 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| ||||||||| || | | |||||| |||||||||||||||||| ||||| || |
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|
| T |
13170340 |
tgttgctgtcatgtgtcatgggaaaaatcctctcgctcttagcacattgaatggtcacggtcagggccatccactactgttccattgccgcgaagagcgt |
13170439 |
T |
|
| Q |
290 |
tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg |
389 |
Q |
| |
|
|||||||| ||||| ||||||| |||| ||||| |||| |||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
13170440 |
tggacgcctatcccctgcatgtaaacgaactttttagatatctgcatgtttaaagatcggttttgtgcagtcaataaaattggtcggacagttgcttttg |
13170539 |
T |
|
| Q |
390 |
gaccggactatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatata |
489 |
Q |
| |
|
|||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| || |
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|
| T |
13170540 |
gaccgggcgatagtgttgagttattgactgaatatgtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatcta |
13170639 |
T |
|
| Q |
490 |
tgactctcattgttttggtttccctggtga |
519 |
Q |
| |
|
|||| ||||| ||| |||||||||||||| |
|
|
| T |
13170640 |
tgaccctcatcgttacggtttccctggtga |
13170669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 524
Target Start/End: Original strand, 44688554 - 44688775
Alignment:
| Q |
306 |
gcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggacc---ggactatag |
402 |
Q |
| |
|
|||||||||| ||||| ||||||| || || |||||||| | ||||| | ||| ||||||||||| ||||| |||||| |||| | ||||| ||| |
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|
| T |
44688554 |
gcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttag |
44688653 |
T |
|
| Q |
403 |
tgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgt |
502 |
Q |
| |
|
||| | | ||||| || |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| || |
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|
| T |
44688654 |
tgtgcaacaagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggt |
44688753 |
T |
|
| Q |
503 |
tttggtttccctggtgatgatg |
524 |
Q |
| |
|
||||| ||||| ||||| |||| |
|
|
| T |
44688754 |
tttgggttcccgggtgaagatg |
44688775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 289 - 516
Target Start/End: Complemental strand, 18991562 - 18991335
Alignment:
| Q |
289 |
ttggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgctttt |
388 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| ||| |
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|
| T |
18991562 |
ttggacgttgatcccatgcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgttt |
18991463 |
T |
|
| Q |
389 |
ggaccggactatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatat |
488 |
Q |
| |
|
||| |||||||||||| |||||| |||||||||||||| |||||||||| ||||||||| |||||||| |||| |||||||||||||||| ||||| | |
|
|
| T |
18991462 |
ggattggactatagtgttgagttagtggctgaatatgtgaatggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatct |
18991363 |
T |
|
| Q |
489 |
atgactctcattgttttggtttccctgg |
516 |
Q |
| |
|
|||||| ||||||||||| |||||||| |
|
|
| T |
18991362 |
gtgactcgcattgttttgggttccctgg |
18991335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 2926346 - 2926385
Alignment:
| Q |
190 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctc |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
2926346 |
aaaggttgttgttgtcacgtgccatgggaaaaaccctctc |
2926385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 7041946 - 7041904
Alignment:
| Q |
188 |
ataaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
7041946 |
ataaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
7041904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 9171274 - 9171234
Alignment:
| Q |
190 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
230 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9171274 |
aaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
9171234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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