View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12927_high_3 (Length: 359)
Name: NF12927_high_3
Description: NF12927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12927_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 50465702 - 50465967
Alignment:
| Q |
1 |
cataatgcattacattctgtgatcgatgtacatgaatgtctgttggccactaataaaatagaaattcccccactttgttgcagcatagtgctttataaat |
100 |
Q |
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| T |
50465702 |
cataatgcattacattctgtgatcgatgtacatgaatgtttgttggccactaataaaatagaaattcccccactttgttgcagcatagtgctttataaat |
50465801 |
T |
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| Q |
101 |
tactt---ataaataaattatacgtatgcattgtttctcaatttatgatcatcaatatatccatttcccaaagttgaccaattctctcgataaggccctt |
197 |
Q |
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| T |
50465802 |
tactagtaataaataaattatacgtatgcattgtttctcaatttatgatcatcaatatatccatttcccaaagttgaccaatcctctcgataaggccctt |
50465901 |
T |
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| Q |
198 |
gtgcttacttttgttggaatgaatcgagttgactttaaattaagttgatgaatttcaatttgttga |
263 |
Q |
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| T |
50465902 |
gtgcttacttttgttggaatgaatcgagttgactttaaattaagttgatgaatttcaatttcttga |
50465967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 50466045 - 50466082
Alignment:
| Q |
300 |
tagtagttctaatttgatgtgcaaaatgcacacaaatt |
337 |
Q |
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| T |
50466045 |
tagtagttctaattttatgtgcaaaatgcacacaaatt |
50466082 |
T |
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