View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12927_high_5 (Length: 237)

Name: NF12927_high_5
Description: NF12927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12927_high_5
NF12927_high_5
[»] chr3 (28 HSPs)
chr3 (1-222)||(10363275-10363496)
chr3 (1-222)||(10580972-10581202)
chr3 (1-222)||(10127299-10127520)
chr3 (1-222)||(10527729-10527950)
chr3 (1-222)||(10663897-10664118)
chr3 (1-222)||(9839232-9839453)
chr3 (1-222)||(9850110-9850331)
chr3 (1-215)||(10261076-10261290)
chr3 (1-222)||(10032374-10032595)
chr3 (1-222)||(10089161-10089382)
chr3 (1-222)||(10196044-10196265)
chr3 (16-215)||(10375337-10375536)
chr3 (1-222)||(10433521-10433742)
chr3 (1-222)||(11769605-11769826)
chr3 (1-148)||(10672127-10672274)
chr3 (4-222)||(10077640-10077858)
chr3 (4-222)||(10184613-10184831)
chr3 (4-149)||(11781462-11781607)
chr3 (4-152)||(10517926-10518074)
chr3 (5-149)||(10501018-10501162)
chr3 (1-149)||(13344533-13344681)
chr3 (1-149)||(13171475-13171623)
chr3 (5-149)||(13333348-13333492)
chr3 (81-149)||(8861730-8861798)
chr3 (81-149)||(11130583-11130651)
chr3 (81-149)||(11148411-11148479)
chr3 (81-133)||(10889766-10889818)
chr3 (81-133)||(11159574-11159626)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-222)||(57888-58118)
[»] chr2 (1 HSPs)
chr2 (1-222)||(26907268-26907489)
[»] chr8 (2 HSPs)
chr8 (5-149)||(44957170-44957314)
chr8 (62-149)||(11485482-11485569)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-149)||(135365-135513)
scaffold0002 (5-149)||(145420-145564)
scaffold0002 (5-149)||(153725-153869)
[»] chr6 (1 HSPs)
chr6 (67-149)||(31679276-31679358)
[»] chr1 (1 HSPs)
chr1 (82-149)||(826346-826413)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10363275 - 10363496
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10363275 atattatcatttcgcaagttccatatgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgttttagcag 10363374  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| || ||| |||||  ||    
T  10363375 caattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgtgtttgtactattgtgaaactcatcatttcccagtgcatgctt 10363474  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||| ||| ||||||    
T  10363475 tgagagtaaagtccaacaatct 10363496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10581202 - 10580972
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaa---------gtccactctgttatgtctacctttgaacggagaagtcctcctagtg 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10581202 atattatcatttcgcaagttccatatgctgctgttcaaaattgaaaaaattgaagtccactttgttatgtctacctttgaagggagaagtcctcctagtg 10581103  T
Q  92 tttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaa 191  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  10581102 ttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttcaagggctgtatttgtactatggtgaaactcatcacttcccaa 10581003  T
Q  192 tgcatagtttgagagtaaagaccagcaatct 222  Q
    |||||||||||||||||||||||| ||||||    
T  10581002 tgcatagtttgagagtaaagaccaacaatct 10580972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10127520 - 10127299
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  10127520 atattatcatttcgcaagttccatatgttgttgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctagtgttttagcag 10127421  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||| |||| |||||||||| |||||||||  ||    
T  10127420 ctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgtattatgctgaatctcatcacttcccaatgcatgctt 10127321  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||| ||||||||||| ||||||    
T  10127320 tgatagtaaagaccaacaatct 10127299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10527950 - 10527729
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  10527950 atattatcatttgataagttccatacgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctattgttttagcag 10527851  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||  ||    
T  10527850 ctattggcaatcctccatactttcttgcaatctttctgcctatttcttcaagggttgtgtttgtactattgtgaaactcatcacttcccaatgcatgctt 10527751  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  10527750 tgagagtaaagaccaacaatct 10527729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10664118 - 10663897
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  10664118 atattatcattgcgcaagttccatatgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctaatgttttagcag 10664019  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||| || ||| |||||||||  ||    
T  10664018 ctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggttgtgtttgaactatggtgaaactcgtcgcttcccaatgcatgctt 10663919  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||| ||||| ||||| ||||||    
T  10663918 tgaaagtaaggaccaacaatct 10663897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9839453 - 9839232
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||| ||||    
T  9839453 atattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactcacttatgtctacctttgaacgtagaagtcctcctattgttttagcag 9839354  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||  ||    
T  9839353 ctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgcatgctt 9839254  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  9839253 tgagagtaaagaccaacaatct 9839232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9850331 - 9850110
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||| ||||    
T  9850331 atattatcatttgataagttccatatgtcactgttcaaaattgaagtccactcacttatgtctacctttgaacgtagaagtcctcctattgttttagcag 9850232  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||  ||    
T  9850231 ctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgcatgctt 9850132  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  9850131 tgagagtaaagaccaacaatct 9850110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10261290 - 10261076
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  10261290 atattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctccaagtgttttggcag 10261191  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||| |||| |||||||||  |||||||||  ||    
T  10261190 ctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgtattatgctgaatctcatcactgcccaatgcatgctt 10261091  T
Q  201 tgagagtaaagacca 215  Q
    |||||||||||||||    
T  10261090 tgagagtaaagacca 10261076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10032595 - 10032374
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  10032595 atattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagccctccaagtgttttggcag 10032496  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||| | |||| |||| |||||||||  |||||||||  ||    
T  10032495 ctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgcattatgctgaatctcatcactgcccaatgcatgctt 10032396  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  10032395 tgagagtaaagaccaacaatct 10032374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10089382 - 10089161
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  10089382 atattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatttctacctttgaacgtagaagtcctcctagtgttttggcag 10089283  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| |||| |  |||||||||  ||    
T  10089282 ctattggcaatcctccacacttccttgcaatcttccggccaattgcttcaagggttgtgtttgtactatggggaaacttatcattgcccaatgcatgctt 10089183  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||| ||| ||||||    
T  10089182 tgagagtaaagtccaacaatct 10089161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10196265 - 10196044
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  10196265 atattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatttctacctttgaacgtagaagtcctcctagtgttttagcag 10196166  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||| |||||||||||| |||||| |||| |  |||||||||  ||    
T  10196165 ctattggcaatcctccacacttccttgcaatcttcaggccaattgcttcaagggttgtgtttgtactatggggaaacttatcattgcccaatgcatgctt 10196066  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||| ||| ||||||    
T  10196065 tgagagtaaagtccaacaatct 10196044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 10375337 - 10375536
Alignment:
Q  16 aagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctc 115  Q
    ||||||||||   ||||||||||||| || |||||||||||||  |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  10375337 aagttccatacattgctgttcaaaatggatgtccactctgttacatctacctttgaacgtagaagtcctcctattgttttagcagctattggcaatcctc 10375436  T
Q  116 cacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttgagagtaaagacca 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||  |||||||||  |||||||||||||||||    
T  10375437 cacactttcttgcaatcttcctgcctatttcttcaagggttgtgtttgaactatggtgaaactcatcactacccaatgcatgctttgagagtaaagacca 10375536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10433521 - 10433742
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| ||||    
T  10433521 atattatcatttgataagttccatacgttgctgttcaaaattgaagtccactctgttatatctacctttgaacgtaaaagtcctcctattgttttagcag 10433620  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |  ||||||||||||||||  |||||||||  ||    
T  10433621 caattggcaatcctccacactttcttgcaatctccctgcctatttcttcaagggttgtgtttgtattgaggtgaaactcatcactgcccaatgcatgctt 10433720  T
Q  201 tgagagtaaagaccagcaatct 222  Q
     |||||||||||||| ||||||    
T  10433721 cgagagtaaagaccaacaatct 10433742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11769826 - 11769605
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    ||||||||||||   ||||||||||||    |||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||| |||| | || |    
T  11769826 atattatcatttgataagttccatatgtcattgtttaaaattgcagtccactctgttatatctacctttgaacgtagaagccctcctattgttatagcgg 11769727  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  ||    
T  11769726 caattggcaatcctccacactttcttgcaatcttccttcctatttcttcaagggttgtgtttgtactatggtgaaactcatcacttcccaatgcatgctt 11769627  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  11769626 tgagagtaaagaccaacaatct 11769605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 10672274 - 10672127
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||    
T  10672274 atattatcatttcgcaagtttcatatgttgctgttcaaaattgaagtccactcagttatgtctacctttgaacgtagaagtcctcctattgttttagcag 10672175  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttctt 148  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  10672174 ctattggcaatcctccacactttcttgcaatcttcctgcctatttctt 10672127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 10077858 - 10077640
Alignment:
Q  4 ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta 103  Q
    ||||||||| | ||||||||||   | || ||||||||||  ||||||||| |||| |||||||||||||  ||||||||||||| |||||| |||||||    
T  10077858 ttatcatttggtaagttccatacattactattcaaaattgttgtccactctattatatctacctttgaacctagaagtcctcctattgttttagcagcta 10077759  T
Q  104 ttggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttga 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||  |  ||||||||  |||||    
T  10077758 ttggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgagtttgtactatggtgaaactcaccaactctcaatgcatgctttga 10077659  T
Q  204 gagtaaagaccagcaatct 222  Q
     |||||| |||| ||||||    
T  10077658 aagtaaataccaacaatct 10077640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 10184831 - 10184613
Alignment:
Q  4 ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta 103  Q
    ||||||||| | ||||||||||   |||| ||||||||||  ||||||||| |||| |||||||| ||||  ||||||||||||| |||||| |||||||    
T  10184831 ttatcatttggtaagttccatacattgctattcaaaattgttgtccactctattatatctaccttcgaacctagaagtcctcctattgttttagcagcta 10184732  T
Q  104 ttggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttga 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||  ||| || || ||||||||||| ||  |  ||||||||  |||||    
T  10184731 ttggcaatcctccacactttcttgcaatcttcctgcctatttcttcaaaggttgagtttctagtacggtgaaactcaccaactctcaatgcatgctttga 10184632  T
Q  204 gagtaaagaccagcaatct 222  Q
    |||||| ||||| ||||||    
T  10184631 gagtaacgaccaacaatct 10184613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 11781462 - 11781607
Alignment:
Q  4 ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta 103  Q
    ||||||||||| |||||||||||  ||||||| | |||||||||||||||  ||    ||||||||||||| | ||||||||| ||||| || |||||||    
T  11781462 ttatcatttcgtaagttccatatattgctgttgagaattgaagtccactccttttcaactacctttgaacgcataagtcctccaagtgtcttggcagcta 11781561  T
Q  104 ttggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||||||||| ||||| ||| | ||||||||||||||||| |||||    
T  11781562 ttggcaatccaccacattttttagcaatcttcctgccaatctcttc 11781607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 10518074 - 10517926
Alignment:
Q  4 ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta 103  Q
    ||||||||||| |||||||||||| ||||||| | |||||||| ||||||  ||    ||||||||||||| | ||||||||| |||||||| |||||||    
T  10518074 ttatcatttcgtaagttccatatgttgctgtttagaattgaagaccactccttttcaactacctttgaacgcataagtcctccaagtgttttggcagcta 10517975  T
Q  104 ttggcaatcctccacactttcttgcaatcttcctgccaatttcttcaag 152  Q
    |||| || || ||||| ||| | ||||||||||||||||| ||||||||    
T  10517974 ttggtaacccaccacattttttagcaatcttcctgccaatctcttcaag 10517926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 10501162 - 10501018
Alignment:
Q  5 tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat 104  Q
    |||||||||  ||||||||||||  ||| |||| ||||| |||||||||| ||    |  |||||||||| |  |||||||| |||| ||||||||||||    
T  10501162 tatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgcctttgaacgcaatagtcctccaagtgcttttgcagctat 10501063  T
Q  105 tggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
     |||||||| ||||||||||| ||||||||||||||||| |||||    
T  10501062 cggcaatccaccacactttctagcaatcttcctgccaatctcttc 10501018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 13344681 - 13344533
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    |||||||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| ||||    
T  13344681 atattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcag 13344582  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||| |||||||| ||||||||| | |||||||| || |||||||||||    
T  13344581 ctatgggcaatccaccacactttttggcaatctttctaccaatttcttc 13344533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 13171623 - 13171475
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    |||||||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| | ||    
T  13171623 atattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttaggag 13171524  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||| |||||||| ||||||||| | |||||||| || |||||||||||    
T  13171523 ctatgggcaatccaccacactttttggcaatctttctaccaatttcttc 13171475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 13333492 - 13333348
Alignment:
Q  5 tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat 104  Q
    |||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| ||||||||    
T  13333492 tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat 13333393  T
Q  105 tggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
     |||||||| ||||||||| | |||||||| || |||||||||||    
T  13333392 gggcaatccaccacactttttggcaatctttctaccaatttcttc 13333348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 8861798 - 8861730
Alignment:
Q  81 tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||| || |||||| ||||    
T  8861798 tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttc 8861730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 11130583 - 11130651
Alignment:
Q  81 tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||| || |||||| ||||    
T  11130583 tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttc 11130651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 11148411 - 11148479
Alignment:
Q  81 tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||| || |||||| ||||    
T  11148411 tcctccaagtgtttttgcagctatgggcaacccaacacactttcttgcaatctttctaccaattgcttc 11148479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 10889818 - 10889766
Alignment:
Q  81 tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatct 133  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||    
T  10889818 tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatct 10889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 11159574 - 11159626
Alignment:
Q  81 tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatct 133  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||    
T  11159574 tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatct 11159626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 57888 - 58118
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaa---------ttgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtg 91  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  57888 atattatcatttcgcaagttccatatgctgctgttcaaaattgaaaaaattgaagtccactatgttatgtctacctttgaaaggagaagtcctcctagtg 57987  T
Q  92 tttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaa 191  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  57988 ttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttcaagggctgtatttgtactatggtgaaactcatcacttcccaa 58087  T
Q  192 tgcatagtttgagagtaaagaccagcaatct 222  Q
    |||||||||||||||||||||||| ||||||    
T  58088 tgcatagtttgagagtaaagaccaacaatct 58118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26907489 - 26907268
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    |||||||||||||| |||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  26907489 atattatcatttcgtaagttccatacgtcgttgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaattcctcctagtgttttagcag 26907390  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||| | |||| |||||||||  ||    
T  26907389 caattggcaatcctccacactttcttgcaatcttcctgccaatttcttcgagggttgtgttaatactatggtgaaactctttacttcccaatgcatgctt 26907290  T
Q  201 tgagagtaaagaccagcaatct 222  Q
    ||||||||||||||| ||||||    
T  26907289 tgagagtaaagaccaacaatct 26907268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 44957170 - 44957314
Alignment:
Q  5 tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat 104  Q
    ||||||||||  |||||||||||  ||| |||| |||||||||||||||  ||    ||| ||||||||| | ||||||||| |||||||| ||||||||    
T  44957170 tatcatttcgttagttccatatgtcgctattcagaattgaagtccactccttttcaactatctttgaacgcataagtcctcccagtgttttggcagctat 44957269  T
Q  105 tggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    ||||||||| ||||| ||| | ||||||||||||||||| |||||    
T  44957270 tggcaatccaccacattttttagcaatcttcctgccaatctcttc 44957314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 11485569 - 11485482
Alignment:
Q  62 ctacctttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    ||||||||||| | |  |||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  11485569 ctacctttgaatgcattagtcctccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttc 11485482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 135365 - 135513
Alignment:
Q  1 atattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcag 100  Q
    |||||||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| | ||    
T  135365 atattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttaggag 135464  T
Q  101 ctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||| |||||||| ||||||||| | |||||||| || |||||||||||    
T  135465 ctatgggcaatccaccacactttttggcaatctttctaccaatttcttc 135513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 145420 - 145564
Alignment:
Q  5 tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat 104  Q
    |||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| ||||||||    
T  145420 tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat 145519  T
Q  105 tggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
     |||||||| ||||||||| | |||||||| || |||||||||||    
T  145520 gggcaatccaccacactttttggcaatctttctaccaatttcttc 145564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 153725 - 153869
Alignment:
Q  5 tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat 104  Q
    |||||||| | ||||||||||||   || || | ||||| |||||||||| ||   |||||||||||||| | || |||||| |||||||| ||||||||    
T  153725 tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat 153824  T
Q  105 tggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
     |||||||| ||||||||| | |||||||| || |||||||||||    
T  153825 gggcaatccaccacactttttggcaatctttctaccaatttcttc 153869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 31679276 - 31679358
Alignment:
Q  67 tttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    ||||| || ||||||||||| |||||||| ||||||||||||||||| | ||||||| ||||||||||||| |||||| ||||    
T  31679276 tttgagcgtagaagtcctccaagtgttttggcagctattggcaatccgcaacacttttttgcaatcttcctaccaattgcttc 31679358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 826413 - 826346
Alignment:
Q  82 cctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc 149  Q
    |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||    
T  826413 cctcctagcgttttggcagctattggcaatccaccacacttttttgcaatcttcttcccaattgcttc 826346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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