View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12927_low_2 (Length: 433)
Name: NF12927_low_2
Description: NF12927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12927_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 33918002 - 33918406
Alignment:
| Q |
10 |
agcagcacagaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccaaacttgttggacaa |
109 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33918002 |
agcaacacaaaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccgaacttgttggacaa |
33918101 |
T |
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| Q |
110 |
acaaacctccataaattatcagccaaagataagtgttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918102 |
acaaacctccataaattatcagccaaagataagtgttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaa |
33918201 |
T |
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| Q |
210 |
caatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatgtgcaatgtttgcaccagcactgtctcctgcaaagaacat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33918202 |
caatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatttgcaatgtttgcaccagcactgtctcctgcaaagaacat |
33918301 |
T |
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| Q |
310 |
ttttccaaaatctgcataacggttgatccattcatcagaaccatttccatgcaaatgagaaacgacccatttgagggaagtccatgaatcttcgtatgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918302 |
ttttccaaaatctgcataacggttgatccattcatcagaaccatttccatgcaaatgagaaacgacccatttgagggaagtccatgaatcttcgtatgct |
33918401 |
T |
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| Q |
410 |
atagg |
414 |
Q |
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||||| |
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| T |
33918402 |
atagg |
33918406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 33896794 - 33896871
Alignment:
| Q |
281 |
gcaccagcactgtctcctgcaaagaacatttttccaaaatctgcataacggttgatccattcatcagaaccatttcca |
358 |
Q |
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||||||||||| || ||| | ||||||| ||| ||||||||||||| | || | |||||||||||||||||||||| |
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| T |
33896794 |
gcaccagcactatcacctcctaagaacactttctcaaaatctgcatattgattcaaccattcatcagaaccatttcca |
33896871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 19642479 - 19642883
Alignment:
| Q |
10 |
agcagcacagaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccaaacttgttggacaa |
109 |
Q |
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|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| |
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| T |
19642479 |
agcaacacaaaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacatgtcatcgggtcccgaacttgttggacaa |
19642578 |
T |
|
| Q |
110 |
acaaacctccataaattatcagccaaagataagt---gttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaacca |
206 |
Q |
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| T |
19642579 |
acaaatcgccataaattatccacaaaagataaatattgttcaggtttctcag---cctcagatccaactctttccacaccccaaaagaatgcatgaacca |
19642675 |
T |
|
| Q |
207 |
aaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatgtgcaatgtttgcaccagcactgtctcctgcaaagaa |
306 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19642676 |
aaacaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaa |
19642775 |
T |
|
| Q |
307 |
catttttccaaaatctgcataacggttgatccattcatcagaaccatttccatgcaaatgagaaacgacccatttgagggaagtccatgaatcttcgtat |
406 |
Q |
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| ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
19642776 |
aacttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgagaagccacccatttgagggaagtccatgaatcttcgtat |
19642875 |
T |
|
| Q |
407 |
gctatagg |
414 |
Q |
| |
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|||||||| |
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| T |
19642876 |
gctatagg |
19642883 |
T |
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