View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12927_low_4 (Length: 351)
Name: NF12927_low_4
Description: NF12927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12927_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 8726388 - 8726043
Alignment:
| Q |
16 |
gatttagggttagtcgaagttccctcaaccaatagtaggttaggtgagcaataacacaaccgaacgatggttaactgaatctttctcaa----------- |
104 |
Q |
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| T |
8726388 |
gatttagggttagtcgaagttccctcaaccaatagtaggttaggtgagcaataacacaaccgaacgatggttaactgaatctttctcaagtctaataaat |
8726289 |
T |
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| Q |
105 |
atatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaatttaactcgtgatttatgtttatagtgcctctaactaaa |
204 |
Q |
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| T |
8726288 |
atatgaaggttatgtagacattagacttagtcaaaactcaaccgaactcaataattaggaatttaactcgtgattcatgtttacagtgcctctaactaaa |
8726189 |
T |
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| Q |
205 |
ggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgttgcc |
304 |
Q |
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| T |
8726188 |
ggaagtgatgagaatggaggaacattatgcgcagagttgtgcgcatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgttgcc |
8726089 |
T |
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| Q |
305 |
tcaaaaacgaaagttaacactgcatttaagtacgatgttttccccc |
350 |
Q |
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| T |
8726088 |
tcaaaaacgaaagttaacactgcatttaagtataatgtttttcccc |
8726043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 8686726 - 8686382
Alignment:
| Q |
16 |
gatttagggttagtcgaagttccctcaaccaatagtaggttaggtgagcaataacacaaccgaacgatggttaactgaatctttctcaa----------- |
104 |
Q |
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| T |
8686726 |
gatttagagttagtcaaagttccctcaaccaacaataggttaggcgagcaataacacaaccgaacgatggttaaccgaatctttctcgagtagtctaata |
8686627 |
T |
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| Q |
105 |
---atatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaatttaactcgtgatttatgtt-tatagtgcctctaac |
200 |
Q |
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| T |
8686626 |
aatatatgaaggtcatgtagacaacatacttagtcaaaactcaacggaactcgataattaggaatttaactcgtgatccatgttatatagtgcctctaac |
8686527 |
T |
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| Q |
201 |
taaaggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgt |
300 |
Q |
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| T |
8686526 |
tgaaggaagcgatgagaatggaggaacgttatgtggagagatgtgcacatgaggcttgcgtcaagagatcgttccatgaaatggaaagatgctagtgtgt |
8686427 |
T |
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| Q |
301 |
tgcctcaaaaacgaaagttaacactgcatttaagtacgatgtttt |
345 |
Q |
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| T |
8686426 |
tgcctcaaaaacgaaagttaacaccacatttaagtaatatgtttt |
8686382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 23431986 - 23432327
Alignment:
| Q |
17 |
atttagggttagtcgaagttccctcaaccaatagtaggttaggtgagcaataacacaaccgaacgatggttaactgaatctttctcaa-----------a |
105 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||| |||||||| ||||||||||| | | |
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| T |
23431986 |
atttagggttagtcgaagttccctcaaccaacaataggttaggcgagcaataacacaaccaaacaatggttaatcgaatctttctcgagtctaataaata |
23432085 |
T |
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| Q |
106 |
tatgaaggttatgtagacatcagacttagtcaaaactcaacggaactcaataattaggaatttaactcgtgatttatgtt-tatagtgcctctaactaaa |
204 |
Q |
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||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| |||| || |
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| T |
23432086 |
tatgaaggtcatgtagacaacatacttagtcaaaactcaacggaactcgataattaggaatttaactcatgatccatgttatatagtgcctcaaactgaa |
23432185 |
T |
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| Q |
205 |
ggaagtgatgagaatggaggaacattatgcgcagagttgtgcacatgagacttgtgtcaaaatatcatgccgtgcaatggaaggatgctagtgtgttgcc |
304 |
Q |
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||||| ||||||||||||||||| ||||| | |||| |||||||||||| ||| ||||| | ||| ||||||| ||||||| |||||||||||||| || |
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| T |
23432186 |
ggaagcgatgagaatggaggaacgttatgtggagagatgtgcacatgaggtttgcgtcaagagatcgtgccgtgaaatggaaagatgctagtgtgtttcc |
23432285 |
T |
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| Q |
305 |
tc-aaaaacgaaagttaacactgcatttaagtacgatgtttt |
345 |
Q |
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|| |||||||||||||||||| ||||||||| ||||||| |
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| T |
23432286 |
tcaaaaaacgaaagttaacaccagatttaagtaatatgtttt |
23432327 |
T |
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