View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_high_11 (Length: 387)
Name: NF12928_high_11
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 55739323 - 55739703
Alignment:
| Q |
7 |
aaattattctcaacatccctttaatttaatttaaaattttcaattcgttcgttatattttggttcctatatccgttctgaattggggatcccgtaattgt |
106 |
Q |
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| T |
55739323 |
aaattattctcaacatccctttaatttaatttaaaattttcaattcgttcgttatattttggttcctatatccgttctgaattggggatcccgtaattgt |
55739422 |
T |
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| Q |
107 |
gcgtctgaatttaagtggtccttttcctcacaagtgtgagttagagtgcccaaattgtataaaaaagcgagtgttaaacaatatatatatgtgagagagt |
206 |
Q |
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| T |
55739423 |
gtgtctgaatttaagtggtccttttcctcacaagtgtgagttagagtgcccaaattgtataaaaaagcgagtgttaaacaatatatataagtgagagagt |
55739522 |
T |
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| Q |
207 |
ccataaatctaatgcctggaattttgaatcagagttttgtttaacttttatttgccgtgagaaaatcactataattgaaaaaggattctgatgtcatact |
306 |
Q |
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| T |
55739523 |
ccataaatctaatgcctggaattttgaatcagagttttgtttaacttttatttgctgtgagaaaatcactatgattgaaaaaggattctgatgtcatact |
55739622 |
T |
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| Q |
307 |
tttggtgttgcaggcgcttttgtttttggaacaaatggtgtccaatggatgccaaacaaaatctctccttggttaacaaat |
387 |
Q |
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| T |
55739623 |
tttggtgttgcaggcgcttttgtttttggaacaaatggtgtccaatggatgccaaacaaaatctctccttggttaacaaat |
55739703 |
T |
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