View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_high_13 (Length: 370)
Name: NF12928_high_13
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 543685 - 543337
Alignment:
| Q |
8 |
cgaagaaaatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
543685 |
cgaagaaaatactgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtgtttacctta |
543586 |
T |
|
| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
543585 |
ttgttttactattaagactgataaactaacatcaatattcaaggttattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcatcggaaaggg |
543486 |
T |
|
| Q |
208 |
agtcgtaccatataacacagctctagtttttattatgaaaaatgctattgtgcacgacnnnnnnngtcgtgcaaatcgcacgagtccgtaaaagagtgag |
307 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
543485 |
agtcgtaccatatagcacaactctagtttttattatgaaaaatgctattgtgcacgacaaaaaaagtcatgcaaatcgcacgagtccgtaaaagagtgag |
543386 |
T |
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| Q |
308 |
cttgcaattcaattactttgttttttaattctcatttgcccaacaatat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
543385 |
cttgcaattcaattactttgttttttaattctcatttgcccaacaatat |
543337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 40720934 - 40720710
Alignment:
| Q |
8 |
cgaagaaaatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
40720934 |
cgaagaaaatactgctttggagtgtagtggtattgatgatcataatgaccatagcaacaaagaatattgatgcttattttttgtttcggtatttacttta |
40720835 |
T |
|
| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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| T |
40720834 |
ttgttttactattaatatagataaattagcatcaatattcaggagtattcattgagcaaattgtgtgtagcagcgtgtcgtgcaaattcgtcggaaaggg |
40720735 |
T |
|
| Q |
208 |
agtcgtaccatataacacagctcta |
232 |
Q |
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|||||||||||||| |||||||||| |
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| T |
40720734 |
agtcgtaccatatagcacagctcta |
40720710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 16085919 - 16085698
Alignment:
| Q |
8 |
cgaagaaaatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttacctta |
107 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
16085919 |
cgaagaaaatactgctttggagggtagttttattgatgatcatagtgaccatagcaacaaagaatattgatacttattttttgttttagtatttacttta |
16085820 |
T |
|
| Q |
108 |
ttgttttactattaagaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16085819 |
ttgttttactattaatacagataaactagcatcaatattcaaggctattcattgagcaaattatgtgtagcagcgtgtcgtgcaaattcgtcggaaaggg |
16085720 |
T |
|
| Q |
208 |
agtcgtaccatataacacagct |
229 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
16085719 |
agtcgtaccatatagcacagct |
16085698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 32722436 - 32722215
Alignment:
| Q |
10 |
aagaaaatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttatt |
109 |
Q |
| |
|
||||||| | ||| |||||||| |||| ||| |||||||| ||||| |||||||| |||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
32722436 |
aagaaaacactgcattggagtgaagtggtatagatgatcacagtgatcatagcaataaagaatattgaagcttattttttattttagtatttactttatt |
32722337 |
T |
|
| Q |
110 |
gttttactatta--agaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaaggg |
207 |
Q |
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|||||||| ||| | | ||| |||||| ||||||||| ||| |||||||||| |||||| |||||| ||||||||||| |||||||| |||||||| |
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| T |
32722336 |
gttttact-ttagtatatagataaactagtatcaatatttaaggttattcattgaacaaattgtgtgtatcagcgtgtcgtgtaaattcgttggaaaggg |
32722238 |
T |
|
| Q |
208 |
agtcgtaccatataacacagctc |
230 |
Q |
| |
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| |||| | ||||| |||||||| |
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| T |
32722237 |
aatcgtgctatatagcacagctc |
32722215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 35752210 - 35752252
Alignment:
| Q |
314 |
attcaattactttgttttttaattctcatttgcccaacaatat |
356 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
35752210 |
attcaattactgtgctttttaattctcatatgcccaacaatat |
35752252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 52769166 - 52769382
Alignment:
| Q |
9 |
gaagaaaatattgctttggagtgtagtgatattgatgatcatagtgaccatagcaacaaagaatattgatgcttattttttgttttagtatttaccttat |
108 |
Q |
| |
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|||||||| |||||||||||||| |||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52769166 |
gaagaaaacattgctttggagtgaagtggtacagatgatca-------catagcaataaagaatattgatgcttattttttgttttagtatttactttat |
52769258 |
T |
|
| Q |
109 |
tgttttactatta--agaccgatgaactagcatcaatattcaagactattcattgagcaaattatgtgtagtagcgtgtcgtgcaaattcgtcggaaagg |
206 |
Q |
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||||||||| ||| | | ||| |||||| |||| |||| ||| |||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |
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| T |
52769259 |
tgttttact-ttagtatatggataaactagtatcagtatttaaggttattcattgagcaagttgtgtgtagcagcgtgtcgtgcaaattcgtcgaaaagg |
52769357 |
T |
|
| Q |
207 |
gagtcgtaccatataacacagctct |
231 |
Q |
| |
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|| ||| | |||||||||| |||| |
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| T |
52769358 |
tagacgtgctatataacacaactct |
52769382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 26182765 - 26182648
Alignment:
| Q |
240 |
ttatgaaaaatgctattgtgcacgacnnnnnnngtcgtgcaaatcgcacgagtccgtaaaagagtgagcttgcaattcaattactttgttttttaattct |
339 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||| ||||| || ||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
26182765 |
ttatgaaaaatgctagtgtgcacgacaaaaaaa-tcgtgcaaatcacacgaatcggtataagagtgagcttgccattcaattactgtgttttttaattct |
26182667 |
T |
|
| Q |
340 |
catttgcccaacaatatct |
358 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
26182666 |
gatttgcccaacaatatct |
26182648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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