View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_high_21 (Length: 244)
Name: NF12928_high_21
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_high_21 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0083 (2 HSPs) |
| | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 11781319 - 11781092
Alignment:
| Q |
2 |
gattattctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctc |
101 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11781319 |
gattattctcaaggcgaaaatgtggtggaggaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctc |
11781220 |
T |
|
| Q |
102 |
atgaagaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaa |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11781219 |
atgaagagaagtttgtcatgcatgaccttgtcaatgatttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaa |
11781120 |
T |
|
| Q |
202 |
tgttcgtcacttctcatataaccaagaa |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
11781119 |
tgttcgacacttctcatataaccaagaa |
11781092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 10518217 - 10518459
Alignment:
| Q |
2 |
gattattctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctc |
101 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10518217 |
gattattctcaagatgaaaatgcgatggaggaaattggtgatgattgttttgctgaattattatcaagatcattaattcaacaattaagcaatgatgctc |
10518316 |
T |
|
| Q |
102 |
atgaagaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaa |
201 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
10518317 |
atgaaaaaaagtgtgtcatgcatgaccttgtccacgatttagctacattcgtctcaggaaaaagttgttgcaggcttgaatgtggtgacatccctgaaaa |
10518416 |
T |
|
| Q |
202 |
tgttcgtcacttctcatataaccaagaaatgtatgacattttc |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10518417 |
ggttcgtcacttctcatataaccaagaatactatgacattttc |
10518459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 9839629 - 9839835
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||||||||| | |
|
|
| T |
9839629 |
ggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtggggaaaaatttgtcatgcatgaccttgtcaatg |
9839728 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
|
|
| T |
9839729 |
atttagctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccctgaaaatgttcgtcacttctcatataaccaagaaaactacga |
9839828 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
9839829 |
cattttc |
9839835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 9850507 - 9850713
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||||||||| | |
|
|
| T |
9850507 |
ggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtggggaaaaatttgtcatgcatgaccttgtcaatg |
9850606 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
|
|
| T |
9850607 |
atttagctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccctgaaaatgttcgtcacttctcatataaccaagaaaactacga |
9850706 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
9850707 |
cattttc |
9850713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 10127696 - 10127902
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| | |
|
|
| T |
10127696 |
ggtgatgattgttttgctgaattgttatcgagatcattaattcaacaattaagcgatgatgctcgtggagaaaagtttgtcatgcatgaccttgtcaatg |
10127795 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||| ||||||||||||||| |||||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10127796 |
atttatctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatctctgaaaatgttcgtcacttctcatataaccaagaatactatga |
10127895 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
10127896 |
cattttc |
10127902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 10032774 - 10032977
Alignment:
| Q |
41 |
gatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgact |
140 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| || | |
|
|
| T |
10032774 |
gatgattgttttgctgaattgctatcgagatcgttaattcaacaattaagcgatgatgctcgtggagaaaagtttgtcatgcatgaccttgtcaatgatt |
10032873 |
T |
|
| Q |
141 |
tagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatgacat |
240 |
Q |
| |
|
||||||||||| ||| || |||||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10032874 |
tagctacattcatattaggaaaaagttgttgcaggcttgaatgtggtgacatctctgaaaatgttcgtcacttctcatataaccaagaatactatgacat |
10032973 |
T |
|
| Q |
241 |
tttc |
244 |
Q |
| |
|
|||| |
|
|
| T |
10032974 |
tttc |
10032977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 10581378 - 10581569
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||||||||||| | |
|
|
| T |
10581378 |
ggtgatgattgttttgttgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtggggaaaaatttgtcatgcatgaccttgtcaatg |
10581477 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaa |
229 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10581478 |
atttagctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccctgaaaatgttcgtcacttctcatataaccaagaa |
10581569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 10363099 - 10362893
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || | |
|
|
| T |
10363099 |
ggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcaatgatgatcgtggggaaaaatttgtcatgcatgaccttgttaatg |
10363000 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10362999 |
atttagcaacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccttgaaaatgttcgtcacttctcatataaccaagaatactatga |
10362900 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
10362899 |
cattttc |
10362893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 11770002 - 11770208
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| || | |
|
|
| T |
11770002 |
ggtgatgattggtttgctgaattgttatcgagatcgttaattcaacaattaagtgatgatgctcgtggagaaaagtttgttatgcatgaccttgtaaatg |
11770101 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11770102 |
atttagctacattcatatcaggaaaaagttgttgcaggcttgaatgtggtgacatccataaaaatgttcgtcacttctcatataaccaagaatactatga |
11770201 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
11770202 |
cattttc |
11770208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 10433341 - 10433139
Alignment:
| Q |
42 |
atgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgactt |
141 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||| | |||||| || || |||||||||||||||||||||||||||||| || || |
|
|
| T |
10433341 |
atgattgttttgctgaattgttatcgagatcgttaattcaacgattaaccgatgatgatcgtggagaaaagtttgtcatgcatgaccttgtcaatgattt |
10433242 |
T |
|
| Q |
142 |
agctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatgacatt |
241 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10433241 |
atctacattcgtatcaggaaaaagttgttccagacttgaatgtggggacatccttgaaaatgttcgtcacttctcatataaccaagaaatccatgacatt |
10433142 |
T |
|
| Q |
242 |
ttc |
244 |
Q |
| |
|
||| |
|
|
| T |
10433141 |
ttc |
10433139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 10664294 - 10664500
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||| |||| | |
|
|
| T |
10664294 |
ggtgatgattgttttgctgaattgttatcgagatctttaattcaacaatcaagcgatgatgctcatggcgaaaagtttgtgatgcatgaccttatcaatg |
10664393 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||||||||||||||||||| ||||| |||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10664394 |
atttagctacattcgtatcaggaaaaatttgttgcaggcttgaatgtggtgacatgcctgaaaatgttcgtcacttctcatataaccaagaagactatga |
10664493 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
10664494 |
cattttc |
10664500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 10261469 - 10261672
Alignment:
| Q |
41 |
gatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgact |
140 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| || | |
|
|
| T |
10261469 |
gatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgctcgtggagaaaagtttgtcatgcatgaccttgtcagtgatt |
10261568 |
T |
|
| Q |
141 |
tagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatgacat |
240 |
Q |
| |
|
|||||||| | ||||| | ||||||||| || || |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10261569 |
tagctacagttgtatcgggaaaaagttgctgcaggcttgaatgtggtgacatcactgaaaatgttcgtcacttctcatataaccaagaatactatgacat |
10261668 |
T |
|
| Q |
241 |
tttc |
244 |
Q |
| |
|
|||| |
|
|
| T |
10261669 |
tttc |
10261672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 10089558 - 10089764
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10089558 |
ggtgatgattgctttgctgaattgttatcgagatcgttaattcaacaattaagcaatgatgctcgtggagaaaagtttgtcatgcatgaccttgtcaacg |
10089657 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| || |||||| || |||| | | ||||||||| ||||||| |||||||||||||||| |||| |||||||| | |||||||| |||||| ||||||| |
|
|
| T |
10089658 |
atttggctacagtcatatctggacaaagttgtttcagacttggatgtggtgacatccctgaaaaggttcgtcatgtttcatataatcaagaactgtatga |
10089757 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
10089758 |
cattttc |
10089764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 10196441 - 10196647
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10196441 |
ggtgatgattgctttgctgaattgttatcgagatcgttaattcaacaattaagcaatgatgctcgtggagaaaagtttgtcatgcatgaccttgtcaacg |
10196540 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| || |||||| || |||| | | ||||||||| ||||||| |||||||||||||||| |||| |||||||| | |||||||| |||||| ||||||| |
|
|
| T |
10196541 |
atttggctacagtcatatctggacaaagttgtttcagacttggatgtggtgacatccctgaaaaggttcgtcatgtttcatataatcaagaactgtatga |
10196640 |
T |
|
| Q |
238 |
cattttc |
244 |
Q |
| |
|
||||||| |
|
|
| T |
10196641 |
cattttc |
10196647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 10375142 - 10374940
Alignment:
| Q |
42 |
atgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgactt |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||| || || |
|
|
| T |
10375142 |
atgattgttttgctgaattgttattgagatcattaattcaacaattaagcgatgatgcttgtggaaaaaagtttgtcatgcatgaccttgtcaatgattt |
10375043 |
T |
|
| Q |
142 |
agctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatgacatt |
241 |
Q |
| |
|
| ||||||||||||||| ||||||||||| || |||||||| | |||||||||| ||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
10375042 |
atctacattcgtatcaggaaaaagttgttacaggcttgaatgcgatgacatccctgaaaatgttcgtcacttctcatataaccaaaaattctatgacatt |
10374943 |
T |
|
| Q |
242 |
ttc |
244 |
Q |
| |
|
||| |
|
|
| T |
10374942 |
ttc |
10374940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 13853983 - 13853775
Alignment:
| Q |
36 |
ttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaa |
135 |
Q |
| |
|
||||||||||||| ||| |||||||| ||| ||||| ||||||||||||| || |||||| | || | ||| ||| ||||||||||||||||||| |
|
|
| T |
13853983 |
ttggtgatgattgctttcttgaattgtcatccagatccttaattcaacaatcaaatgatgatggttttggaaaaatctttttcatgcatgaccttgtcaa |
13853884 |
T |
|
| Q |
136 |
cgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtat |
235 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| || ||||| |||||||||| | |||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13853883 |
cgacttagctacagtcgtatcaggaaaaagttgttgcaggtgtgaatttggtgacatctccaaaactgttcgtcatttctcatataaccaagaagtgtat |
13853784 |
T |
|
| Q |
236 |
gacattttc |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
13853783 |
gacattttc |
13853775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 10501306 - 10501530
Alignment:
| Q |
2 |
gattattctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctc |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
10501306 |
gattattctcaaggcgaaaaaacggcggaggaagtcggtgatgattattttgtcgaattgttatctagatcgttaattcaacaatcaaatgatgatgctt |
10501405 |
T |
|
| Q |
102 |
atgaagaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaa |
201 |
Q |
| |
|
|| |||||||| |||||||||||||||||| || || ||||| |||||| |||||| |||||||||||| || ||||||||||| |||| ||||||| |
|
|
| T |
10501406 |
gtggagaaaagtatgtcatgcatgaccttgttaatgatttagcaacattcatatcaggaaaaagttgttgcaggtttgaatgtggtaacatttctaaaaa |
10501505 |
T |
|
| Q |
202 |
tgttcgtcacttctcatataaccaa |
226 |
Q |
| |
|
| | || || || |||||||||||| |
|
|
| T |
10501506 |
tatccgccatttgtcatataaccaa |
10501530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 10528120 - 10528332
Alignment:
| Q |
32 |
gaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttg |
131 |
Q |
| |
|
||||| |||||||| || |||||||||||||| || ||||| |||||||| |||| || ||| || || || | |||||||| ||||||||||||||| |
|
|
| T |
10528120 |
gaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaatcatgttggtcgtggaaaaaagtttttcatgcatgaccttg |
10528219 |
T |
|
| Q |
132 |
tcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaat |
231 |
Q |
| |
|
||||||| ||||||||| ||||||| | ||||||||||| || |||||||||||| | || |||||||||| | || || ||||||| ||||||| | |
|
|
| T |
10528220 |
tcaacgatttagctacaatcgtatctggaaaaagttgttacaggcttgaatgtggtaatgtctctaaaaatgtcctccatttgtcatatacccaagaagt |
10528319 |
T |
|
| Q |
232 |
gtatgacattttc |
244 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10528320 |
gtatgacattttc |
10528332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 10185000 - 10185212
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || || ||||| ||||||||||||| || || ||| || || |||||||||| ||||||||||| |
|
|
| T |
10185000 |
ggaagaattaggtgatgattgctttgctgaattattgtccagatccttaattcaacaatcaaatgataatggtcgtggagaaaagtttttcatgcatgac |
10185099 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaag |
227 |
Q |
| |
|
|||||||| || || |||||| ||||||| | |||||||||||| || ||||||||||| | ||| || ||||||||||||| | ||||||| |||| |
|
|
| T |
10185100 |
cttgtcaatgatttggctacagtcgtatctggaaaaagttgttgcaggtttgaatgtggtaatatctctgaaaatgttcgtcatgtttcatatattcaag |
10185199 |
T |
|
| Q |
228 |
aaatgtatgacat |
240 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
10185200 |
aagagtatgacat |
10185212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 10078027 - 10078209
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
||||||| | |||| |||||| ||||||||||| || || ||||| ||||||||||||| || || ||| || || |||||||||| ||||||||||| |
|
|
| T |
10078027 |
ggaagaattaggtggtgattgctttgctgaattattgtccagatccttaattcaacaatcaaatgataatggtcgtggagaaaagtttttcatgcatgac |
10078126 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtca |
210 |
Q |
| |
|
|||||||| || || |||||| ||||||| | |||||||||||| || ||||||||||||| ||| || ||||||||||||| |
|
|
| T |
10078127 |
cttgtcaatgatttggctacagtcgtatctggaaaaagttgttgcaggtttgaatgtggtgatatctctgaaaatgttcgtca |
10078209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 10672444 - 10672656
Alignment:
| Q |
32 |
gaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttg |
131 |
Q |
| |
|
||||| |||||||| || |||||||||||||| || ||||| |||||||| |||| || ||| || || || | |||||||| |||| ||||||||| |
|
|
| T |
10672444 |
gaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaatgatgttggtcgtggaaaaaagtttttcatacatgacctta |
10672543 |
T |
|
| Q |
132 |
tcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaat |
231 |
Q |
| |
|
||||||| ||| ||||| ||||||| | ||||||||||| || |||||||||||| | || |||||||||| | || || ||||||| ||||||| | |
|
|
| T |
10672544 |
tcaacgatttaactacagtcgtatctggaaaaagttgttccaggcttgaatgtggtaatgtctctaaaaatgtcctccatttgtcatatacccaagaagt |
10672643 |
T |
|
| Q |
232 |
gtatgacattttc |
244 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10672644 |
gtatgacattttc |
10672656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 10890064 - 10890278
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
||||||||| |||||||| || ||| ||||||||||||| ||||| |||||||| ||| | ||||| || | | | ||| ||||||||||||||| |
|
|
| T |
10890064 |
ggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattcagcaactgtatgatgattctgaaggacaaatatttgtcatgcatgac |
10890163 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaat---gtggtgacatccctaaaaatgttcgtcacttctcatataacc |
224 |
Q |
| |
|
||||| || || ||||||||| ||||||| | ||||| ||||| ||| |||||| |||||||| ||| |||||||||||||| | ||||||||| | |
|
|
| T |
10890164 |
cttgttaatgatttagctacaatcgtatctggaaaaacttgttatagggttgaatttggtggtgacgcccccaaaaatgttcgtcattgctcatataatc |
10890263 |
T |
|
| Q |
225 |
aagaaatgtatgaca |
239 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
10890264 |
aagaaaagtatgaca |
10890278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 11130337 - 11130123
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||||| || || |||||||||||| || |||| || | ||||| |||||||||||| || |
|
|
| T |
11130337 |
ggaagaagtaggtgatgattgttttgcagaactgttatccaggtcattaattcaacaactacatgttgatactagaggagaaaggtttgtcatgcacgat |
11130238 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaat---gtggtgacatccctaaaaatgttcgtcacttctcatataacc |
224 |
Q |
| |
|
|||| || |||||||||||| ||||||| | ||||||||||| || |||||| |||||||| | | |||||||||||||| | ||||||||| | |
|
|
| T |
11130237 |
tttgttaatgacttagctacactcgtatctggaaaaagttgttacagggttgaatttggtggtgacgcctccaaaaatgttcgtcattgctcatataatc |
11130138 |
T |
|
| Q |
225 |
aagaaatgtatgaca |
239 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
11130137 |
aagaaaagtatgaca |
11130123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 8862044 - 8862260
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||||||| ||||| |||||||||||| || || | || ||| |||||||||||||||||||| |
|
|
| T |
8862044 |
ggaagatgtaggtgatgattgttttgctgaactgttatccagatcattaattcaacaactacatgttggtactagagaacaaaagtttgtcatgcatgac |
8862143 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaat---gtggtgacatccctaaaaatgttcgtcacttctcatataacc |
224 |
Q |
| |
|
||||| || || ||||||||| ||||||| | ||||| |||| ||| |||||| ||||||| | | | || ||||||||||| | |||||||| | |
|
|
| T |
8862144 |
cttgttaatgatttagctacaatcgtatctggaaaaacatgttctagggttgaatttggtggtgatacctccaagaatgttcgtcattgctcatatagtc |
8862243 |
T |
|
| Q |
225 |
aagaaatgtatgacatt |
241 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
8862244 |
aagaagagtatgacatt |
8862260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 11159328 - 11159112
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgac |
127 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| || || | | || |||||||||||||||||||| |
|
|
| T |
11159328 |
ggaagaagtaggtgatgattgttttgctgaattgttatccagatcattaattcaacaactacatgttggtaccagaaaacaaaagtttgtcatgcatgac |
11159229 |
T |
|
| Q |
128 |
cttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaat---gtggtgacatccctaaaaatgttcgtcacttctcatataacc |
224 |
Q |
| |
|
||||| || || ||||||||| ||||||| | |||| ||||| ||| |||||| ||||||| | | | || ||||||||||| | |||||||| | |
|
|
| T |
11159228 |
cttgttaatgatttagctacaatcgtatctgggaaaacttgttatagggttgaatttggtggtgatacctccaagaatgttcgtcattgctcatatagtc |
11159129 |
T |
|
| Q |
225 |
aagaaatgtatgacatt |
241 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
11159128 |
aagaagagtatgacatt |
11159112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 11148164 - 11148109
Alignment:
| Q |
29 |
gaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaaca |
84 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
11148164 |
gaagaagtaggtgatgattgttttgctgaactgttatccagatcattaattcaaca |
11148109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 11245847 - 11245791
Alignment:
| Q |
113 |
tttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgt |
169 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| | ||||||||| |||||||||| |
|
|
| T |
11245847 |
tttgtcatgcatgaccttgttaatgatttagctatagtcgtatcaggaaaaagttgt |
11245791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 11245932 - 11245879
Alignment:
| Q |
28 |
ggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattca |
81 |
Q |
| |
|
||||||||| |||||||| || ||| ||||||||||||| ||||| |||||||| |
|
|
| T |
11245932 |
ggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattca |
11245879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 44957021 - 44956784
Alignment:
| Q |
7 |
ttctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaa |
106 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||| | |
|
|
| T |
44957021 |
ttctcaaggtgaaaaagtggcggaggaagttgtttatgattgttttgctgaattgttatctagatccttaattcaacaattaagtgatgatactcatgga |
44956922 |
T |
|
| Q |
107 |
gaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||||| ||| |||||||||||| ||||| || ||||||||| |
|
|
| T |
44956921 |
gaaaagtttgtcatgcatgaccttgtcaacgatttagctacattcatatcaggaaaatgttgttctaggcttgaatgtggtcacatctctgaaaatgttc |
44956822 |
T |
|
| Q |
207 |
gtcacttctcatataaccaagaaatgtatgacattttc |
244 |
Q |
| |
|
| || || ||||||||||||||| ||||||||||||| |
|
|
| T |
44956821 |
gccatttgtcatataaccaagaagagtatgacattttc |
44956784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 11485809 - 11486012
Alignment:
| Q |
41 |
gatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgact |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| || | |
|
|
| T |
11485809 |
gatgattgttttgctgaattgttatctagatcgttaattcaacaatcaaatgatgatgctcatggagaaaagtttgtcatgcatgaccttgtcaatgatt |
11485908 |
T |
|
| Q |
141 |
tagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatgacat |
240 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| |||||||| ||||||| || |||||||| |||||| || |||||| |
|
|
| T |
11485909 |
tagctacattcatatcaggaaaaagttgttgcagacttgaatgtggtaacatctctaaaaatattcgtcatttgtcatataatcaagaagtgcgtgacat |
11486008 |
T |
|
| Q |
241 |
tttc |
244 |
Q |
| |
|
|||| |
|
|
| T |
11486009 |
tttc |
11486012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 56903 - 56713
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || ||||| |||||||||||||||||| |||| | |
|
|
| T |
56903 |
ggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtggggaaaaatttgtcatgcatgaccttatcaatg |
56804 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaaga |
228 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
56803 |
atttagctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccttgaaaatgttcgtcacttctcatataaccaaga |
56713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 57712 - 57522
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || ||||| |||||||||||||||||| |||| | |
|
|
| T |
57712 |
ggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtggggaaaaatttgtcatgcatgaccttttcaatg |
57613 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaaga |
228 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
57612 |
atttagctacattcgtatcaggaaaaagttgttgcaggcttgaatgtggtgacatccttgaaaatgttcgtcacttctcatataaccaaga |
57522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 26907665 - 26907862
Alignment:
| Q |
38 |
ggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacg |
137 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||| ||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
26907665 |
ggtgatgatttctttgctgaattgctatccagatccttaattcaacaatcaaatgatgatgctcgtggggaaaagtttgtcatgcatgaccttgtcaatg |
26907764 |
T |
|
| Q |
138 |
acttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgttcgtcacttctcatataaccaagaaatgtatga |
237 |
Q |
| |
|
| ||||||||| ||||||| | |||||||||||| || ||||||||||||||| || |||| |||||||| | |||||||| |||||| |||||| |
|
|
| T |
26907765 |
atttagctacaatcgtatctggaaaaagttgttgcaggtttgaatgtggtgaca---ctgaaaaggttcgtcatgtttcatataatcaagaagagtatga |
26907861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 17852257 - 17852043
Alignment:
| Q |
5 |
tattctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatg |
104 |
Q |
| |
|
||||||||||| | ||| | ||| || ||||| ||||| || |||||| ||||||||||||| ||||| |||||||||||| || ||||| |||||| |
|
|
| T |
17852257 |
tattctcaagggggaaaagcagcagaggaagtgggtgacgactgtttttctgaattgttatccagatccttaattcaacaaacaaatgatgattctcatg |
17852158 |
T |
|
| Q |
105 |
aagaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtgacatccctaaaaatgt |
204 |
Q |
| |
|
| |||||||| ||||||| | ||||||| |||||||||||||| ||||||| | |||||||||||| || ||||||||||||||||| || ||||| | |
|
|
| T |
17852157 |
agaaaaagtttttcatgcacggccttgtctacgacttagctacagtcgtatctggaaaaagttgttgcaggtttgaatgtggtgacatctctgaaaatat |
17852058 |
T |
|
| Q |
205 |
tcgtcacttctcata |
219 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
17852057 |
ccgtcatttgtcata |
17852043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 31679066 - 31678825
Alignment:
| Q |
6 |
attctcaaggcgaaaatgtagcggaagaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatga |
105 |
Q |
| |
|
|||||||||| ||||| | | ||| |||||||||||||| | |||| |||||||||||| ||||||||||||||||||| | ||||| | |
|
|
| T |
31679066 |
attctcaaggagaaaaagcaatggaggaagttggtgatgactactttgttgaattgttatctagatcgttaattcaacaatcgcacgatgattttggaag |
31678967 |
T |
|
| Q |
106 |
agaaaagtttgtcatgcatgaccttgtcaacgacttagctacattcgtatcagcaaaaagttgttgtagacttgaatgtggtg---acatccctaaaaat |
202 |
Q |
| |
|
| | |||||| |||||||||| |||||||| || ||||||||| | ||||| | |||||||||||| || | |||| ||||| ||||| || ||||| |
|
|
| T |
31678966 |
acagaagtttctcatgcatgatcttgtcaatgatttagctacaattgtatctggaaaaagttgttgcaggcgtgaacatggtggcaacatctctgaaaat |
31678867 |
T |
|
| Q |
203 |
gttcgtcacttctcatataaccaagaaatgtatgacattttc |
244 |
Q |
| |
|
|| || || || ||||||||||||||| ||||||||||||| |
|
|
| T |
31678866 |
gtccgccatttttcatataaccaagaagagtatgacattttc |
31678825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 29837420 - 29837542
Alignment:
| Q |
50 |
tttgctgaattgttatcaagatcgttaattcaacaattaagcaatgatgctcatgaagaaaagtttgtcatgcatgaccttgtcaacgacttagctacat |
149 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||| | ||||| || ||| |||||| |||||||||||||||| | ||| |||||||| ||| |
|
|
| T |
29837420 |
tttgctgaattgatatctagatccttaattcaacaagcatatgatgatactgatggagaaaaatttgtcatgcatgaccgtatcagtgacttagcggcat |
29837519 |
T |
|
| Q |
150 |
tcgtatcagcaaaaagttgttgt |
172 |
Q |
| |
|
||||||||| || |||||||||| |
|
|
| T |
29837520 |
tcgtatcaggaacaagttgttgt |
29837542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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