View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_high_25 (Length: 228)
Name: NF12928_high_25
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 543320 - 543112
Alignment:
| Q |
1 |
acctctctagtgccttccattgacggtcaccaacctctatatcgtggcttttgattgggttttatattcacttcatcttcttttccttttcattaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
543320 |
acctctctagtgccttccattgacggtcaccaacctctgtatcgtggcttttgattgggctttatattcacttcatcttcttttccttttcattaattta |
543221 |
T |
|
| Q |
101 |
gcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacattattctcacaattaataactggtaactagtaagtacggctttaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
543220 |
gcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacattattctcacaattaataactggtaattagtaagtactgctttaaca |
543121 |
T |
|
| Q |
201 |
tgttataca |
209 |
Q |
| |
|
||| ||||| |
|
|
| T |
543120 |
tgtcataca |
543112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 35753140 - 35753205
Alignment:
| Q |
48 |
cttttgattgggttttatattcacttcatcttcttttccttttcattaattttgcatggaatatga |
113 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35753140 |
cttttgcttggtttttatattcacttcgtcttcttttcattttctttaattttgcatggaatatga |
35753205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 26182617 - 26182531
Alignment:
| Q |
30 |
ccaacctctatatcgtggcttttgattgggttttatattcacttcatct---tcttttccttttcattaattttgcatggaatatga |
113 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||||| |||| | |||||||||||||||||| |
|
|
| T |
26182617 |
ccaacctctatatcgtagcttttgtttggtttttatattcaattcatcttcttcttttccctttcttatattttgcatggaatatga |
26182531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 33509450 - 33509406
Alignment:
| Q |
125 |
caacgaagcatagtaattatgagtgtacattattctcacaattaa |
169 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33509450 |
caacgaaatatagtaattatgaatgtacattattctcacaattaa |
33509406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University