View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_high_27 (Length: 216)
Name: NF12928_high_27
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_high_27 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19610863 - 19611078
Alignment:
| Q |
1 |
ctcttcacaaccttgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagcttgattcatcagcattccatttgttgcagaattttcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
19610863 |
ctcttcacaacctcgaataatcacttcgattcttcgttcaattcacaacgtcaattcatagctcgattcatcagcattccattcgttgtagaatcttcat |
19610962 |
T |
|
| Q |
101 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19610963 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
19611062 |
T |
|
| Q |
201 |
tcattcattcatttgt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19611063 |
tcattcattcatttgt |
19611078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 45401714 - 45401929
Alignment:
| Q |
1 |
ctcttcacaaccttgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagcttgattcatcagcattccatttgttgcagaattttcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
45401714 |
ctcttcacaacctcgaataatcactttgattcttcgttcagttcacaacgtcaattcatagctcgattcatcagcattccattcattgcagaatcttcat |
45401813 |
T |
|
| Q |
101 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45401814 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattcgttat |
45401913 |
T |
|
| Q |
201 |
tcattcattcatttgt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45401914 |
tcattcattcatttgt |
45401929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28462900 - 28462692
Alignment:
| Q |
1 |
ctcttcacaaccttgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagcttgattcatcagcattccatttgttgcagaattttcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
28462900 |
ctcttcacaacctcgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagctcgattcatcagcattccattcgttatagaatcttcat |
28462801 |
T |
|
| Q |
101 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462800 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
28462701 |
T |
|
| Q |
201 |
tcattcatt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
28462700 |
tcattcatt |
28462692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23361298 - 23361513
Alignment:
| Q |
1 |
ctcttcacaaccttgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagcttgattcatcagcattccatttgttgcagaattttcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
23361298 |
ctcttcacaacctcgaataatcacttcgattcttcgttcaagtcacaacgtcaattcatagctagattcatcagcattccattcgttgtagaatcttcat |
23361397 |
T |
|
| Q |
101 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23361398 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattcgttat |
23361497 |
T |
|
| Q |
201 |
tcattcattcatttgt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23361498 |
tcattcattcatttgt |
23361513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 7599622 - 7599830
Alignment:
| Q |
1 |
ctcttcacaaccttgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagcttgattcatcagcattccatttgttgcagaattttcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
7599622 |
ctcttcacaacctcgaataatcacttcgattcttcgttcagttcacaacgtcaattcatagctcgattcatcagcattccattcgttatagaatcttcat |
7599721 |
T |
|
| Q |
101 |
cttagggttcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599722 |
cttagggctcgtgattttgttctaattaattcaatttgagataagtgataatttgtgtttttgttcttagttataatttgttgattctgttattctttat |
7599821 |
T |
|
| Q |
201 |
tcattcatt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
7599822 |
tcattcatt |
7599830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University