View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_high_3 (Length: 725)

Name: NF12928_high_3
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_high_3
NF12928_high_3
[»] chr3 (1 HSPs)
chr3 (7-706)||(25649864-25650567)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 706
Target Start/End: Complemental strand, 25650567 - 25649864
Alignment:
Q  7 atggacatcatcaaccagagttacagatgctgttagtatagaatattggagaattaataaaaaattcattaacatgtttaataaaattttatttcattat 106  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650567 atggacaccaacaaccagagttacagatgctgttagtatagaatattggagaattaataaaaaattcattaacatgtttaataaaattttatttcattat 25650468  T
Q  107 acaagaatatgaagttatgagaagagtaaa--ctcatcaatcaatggaaacatgctcattctaaaacaagaagagatgaaaaatgtggaaaggagatgaa 204  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650467 acaagaatatgaagttatgagaagagtaaaaactcatcaatcaatggaaacatgctcattctaaaacaagaagagatgaaaaatgtggaaaggagatgaa 25650368  T
Q  205 aaatgcttgaaacttgaaagttacttttcttacatttccaaagaagagattctaaaacattcaaaagtcttagaactattataaggacaacatggaatcc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25650367 aaatgcttgaaacttgaaagttacttttcttacatttccaaagaagagattctaaaacattcaaaagtcttagaacaattataaggacaacatggaatcc 25650268  T
Q  305 atttgacgacaatttcccacaatataaggacaacattttcaaaaacactaaaaacaatgtatcgagatttttgtcctaatttttataaaaagatagggac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  25650267 atttgacgacaatttcccacaatataaggacaacattttcaaaaacactaaaaacaatgtatcaagatttttgtcctaa-ttttataaatagatagggac 25650169  T
Q  405 caagaattgatnnnnnnnnnntaaa--ttatagagattaagatgaactaaattatattttatagtaactaaaaatatattttcataattttcacaaactt 502  Q
    |||||||||||           |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  25650168 caagaattgataaaaaaaaaaaaaaatttatagagattaagatgaactaaattatattttatagtaactaaaaatatatttttataattttcaaaaactt 25650069  T
Q  503 tcttgatgtattttnnnnnnnntaaaatcgtgtagtcttctcttaagaaaatatgaaaataaattgaacagtcagattggaccctttcaattagtcgatt 602  Q
    || |||||||||||         ||| || || | |||||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| ||     
T  25650068 tcatgatgtattttaaaaa----aaattcatgaattcttctcttaagaaaatatg-aaataaattgaacagtcggattgaacccttccgattagtcaatc 25649974  T
Q  603 ctgaagtcggataatttnnnnnnntaaataa------agaaataaaccgactccaaagttttaacgaagaaagtaatgaaggttagcatatactaaccaa 696  Q
    || |||| ||||| |          ||| ||      |||||||||||||||||||||||||||||||||||||||  ||| |||| || ||| ||||||    
T  25649973 cttaagttggatattgaattaaaaaaaaaaaaaccagagaaataaaccgactccaaagttttaacgaagaaagtaacaaagtttagtatgtacaaaccaa 25649874  T
Q  697 tgagccaaaa 706  Q
    ||||||||||    
T  25649873 tgagccaaaa 25649864  T

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