View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_high_4 (Length: 672)

Name: NF12928_high_4
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_high_4
NF12928_high_4
[»] chr5 (1 HSPs)
chr5 (18-655)||(38998942-38999579)


Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Original strand, 38998942 - 38999579
Alignment:
Q  18 aattcaattcttgaatactcaattggatccaacataacttcagatatctttctatcaagcaaaataacttccgacgatatcgacgaactatttgttgatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38998942 aattcaattcttgaatactcaattggatccaacataacttcagatatctttctatcaagcaaaataacttccgacgatatcgacgaactatttgttgatt 38999041  T
Q  118 ctgataccaaagatgtgtctaaagataatgttaattgaacagttccagctggagaatgaaaaagatcagttgaagaaaggctatagtcttgagttacttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38999042 ctgataccaaagatgtgtctaaagataatgttaattgaacagttccagctggagaatgaaaaagatcagttgaagaaaggctatagtcttgagttacttt 38999141  T
Q  218 tccttttccaacaatttgtgaaattggaaccaaagcaaaccctaaaagttggtcctccatgtgaattcttgctctactaaacatccaaatttcacatttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38999142 tccttttccaacaatttgtgaaattggaaccaaagcaaaccctaaaagttgatcctccatgtgaattcttgctctactaaacatccaaatttcacatttc 38999241  T
Q  318 ataacagcatctatttgagttatcttcatcctcaagttttcattgaatgttggattttttccacctccattgattattcttgtagaaagagtttcatcag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38999242 ataacagcatctatttgagttatcttcatcctcaagttttcattgaatgttggattttttccacctccattgattattcttgtagaaagagtttcatcag 38999341  T
Q  418 ggttgtaagtaagggagaatttagcatatacatcttgattatcatagatgcaaatgttatgaatgtttctagcatgatgaacatagacatcaagaagacc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38999342 ggttgtaagtaagggagaatttagcatatacatcttgattatcatagatgcaaatgttatgaatgtttctagcatgatgaacatagacatcaagaagacc 38999441  T
Q  518 tgtgaactctgcttcatcttcatcatctaattgggtagctctattcaaatttggattgtacctaaagttgttgttttgatgactctgattgaatgaatcc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38999442 tgtgaactctgcttcatcttcatcatctaattgggtagctctattcaaatttggattgtacctaaagttgttgttttgatgactctgattgaatgaatcc 38999541  T
Q  618 attctaatcaatgtttttgccttgtatgtctgttcatc 655  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38999542 attctaatcaatgtttttgccttgaatgtctgttcatc 38999579  T

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