View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_low_10 (Length: 471)
Name: NF12928_low_10
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 44965520 - 44965973
Alignment:
| Q |
16 |
gtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttggacgtccattgtcatcaacttgatatattagatt |
115 |
Q |
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| T |
44965520 |
gtgttgacatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttggacgtccattgtcatcaacttgatatattagatt |
44965619 |
T |
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| Q |
116 |
cttcatctgtcaatgaatttgctgaatggttgaaagaagaatatggtggtctagatattctagtaagtttctaaaatgtaattagccaaaaatgtgaaat |
215 |
Q |
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| T |
44965620 |
cttcatccgtcaatgaatttgctgaatggttgaaagaagaatatggtggtctagatattctagtaagtttctaaaatgtaattagccaaaaatgtgaaat |
44965719 |
T |
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| Q |
216 |
t----------tctgtttataggtgttagcattgttnnnnnnntgaggagtgaataatcaatctctaatttctgtttgcaatttaaattttttatcaatt |
305 |
Q |
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| T |
44965720 |
tcgtctttaattttgattataggtgttagcattgttaaaaaaatgaggagtgaataatcaatctctaatttctgtttgcaatttaaattttttatcaatt |
44965819 |
T |
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| Q |
306 |
gtttcttggctataattttgtcatttataggtaaataatgctggtgttaattcgaacatgggatctgataactcagttgaaaatgctcgtaaatgtattg |
405 |
Q |
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| T |
44965820 |
gtttcttggctataattttgtcatttataggtaaataatgctggtgttaattcgaacatgggatctgataactcagttgaaaatgctcgtaaatgtattg |
44965919 |
T |
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| Q |
406 |
aaacaaattattatgggaccaagagaatgattgaagctatgattcctttgatga |
459 |
Q |
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| T |
44965920 |
aaacaaattattatgggaccaagagaatgattgaagctatgattcctttgatga |
44965973 |
T |
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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 40068819 - 40068915
Alignment:
| Q |
26 |
caagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttggacgtccattgtcatcaacttgatatattagattcttcatc |
122 |
Q |
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| T |
40068819 |
caagagatgctggtgttggcgttgaatcaattaaggtcttgcaagaaggtggtctcgatgtggcatgtcatcaacttgatgtattagattcttcatc |
40068915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 40069129 - 40069211
Alignment:
| Q |
369 |
tctgataactcagttgaaaatgctcgtaaatgtattgaaacaaattattatgggaccaagagaatgattgaagctatgattcc |
451 |
Q |
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| T |
40069129 |
tctgataattcagttgaaaatgctcatacggttattgatacgaattattttggaaccaaacgtatgattgaagctatgattcc |
40069211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 10898433 - 10898494
Alignment:
| Q |
22 |
acatcaagagatgctagtgttggtgttgaatcaattaaggtcttgcaagaaggtggtttgga |
83 |
Q |
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| T |
10898433 |
acatcaagagatgctagtgctggtgctgaatcaattaagattttgcaagaaggtggtttgga |
10898494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 10898727 - 10898806
Alignment:
| Q |
342 |
aatgctggtgttaattcgaacatgggatctgataactcagttgaaaatgctcgtaaatgtattgaaacaaattattatgg |
421 |
Q |
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| T |
10898727 |
aatgctggtgttaatttcaatctcgggtctgataactctgttgaaaatgctcgcaaggttattgaaacaaattattatgg |
10898806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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