View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_low_12 (Length: 409)
Name: NF12928_low_12
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Original strand, 2855162 - 2855542
Alignment:
| Q |
14 |
taaatagacaccatttatgttggaattaagaaaacaagaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataaccatcattt |
113 |
Q |
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| T |
2855162 |
taaatagacaccatttatgttggaattaagaaaacaagaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataaccatcattt |
2855261 |
T |
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| Q |
114 |
tctttgcaccgtccctaaaaaccatgaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataacaagcccttcattcat |
213 |
Q |
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| T |
2855262 |
tctttgcaccgtccctaaaaaa-atgaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataacaagcccttcattcat |
2855360 |
T |
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| Q |
214 |
ctacactttcaaatcacaataacatattttccatcttcttagactaaaataacaccttaacaaaatttgaaccttgcataaagggtcatagaattctaca |
313 |
Q |
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| T |
2855361 |
ctacactttcaaatcacaataacatattttccatcttcttagactaaaataacaccttaacaaaatttgaaccttgcataaagggtcatagaattctaca |
2855460 |
T |
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| Q |
314 |
tattcaacta-nnnnnnngagttttgagtatatctgcaaacatggtttttcgccaacttgtttatcttattgcagaggaaaa |
394 |
Q |
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| T |
2855461 |
tattcaactattttttttgagttttgagtatatctgcaaacatggtttttcgccaacttgtttatcttattgcagaggaaaa |
2855542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 2851297 - 2851356
Alignment:
| Q |
139 |
gaacttgtcatgcaccttcctatacaattcaaaattctcctattttttgtattatataac |
198 |
Q |
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| T |
2851297 |
gaacttatcatgcaccttcctatacaattcaaaattgtgctttttttttaattatataac |
2851356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 2850787 - 2850828
Alignment:
| Q |
42 |
agaaaacaagaaatttcctttgatattgtcaagaaataacca |
83 |
Q |
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| T |
2850787 |
agaaaacaagaaattttctttgatagtgtcaagaaataacca |
2850828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 10477343 - 10477464
Alignment:
| Q |
270 |
ttaacaaaatttgaaccttgcataaagggtcatagaattctacatattcaactannnnnnngagttttgagtatatctgcaaacatggtttttcgccaac |
369 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||| |||||||| || || |||||||||||||| |||||||||||||| ||||| |
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| T |
10477343 |
ttaacaaactttgaaccttgcaaaaagggctatagaattctgcatattcatctgtatttttgaattttgagtatatctacaaacatggtttttagccaat |
10477442 |
T |
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| Q |
370 |
ttgtttatcttattgcagagga |
391 |
Q |
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|||||| |||||||| |||||| |
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| T |
10477443 |
ttgtttgtcttattgaagagga |
10477464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 10477117 - 10477198
Alignment:
| Q |
24 |
ccatttatgttggaattaagaaaacaa-gaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataa |
104 |
Q |
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||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||| || |||| ||||||| ||||| |
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| T |
10477117 |
ccatttatgttggaattcataaaacaaagaactttcctttgatattgtcaagaaataacaaagcatatttttattattataa |
10477198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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