View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_low_14 (Length: 384)

Name: NF12928_low_14
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_low_14
NF12928_low_14
[»] chr5 (15 HSPs)
chr5 (274-346)||(29054901-29054973)
chr5 (266-342)||(33533536-33533612)
chr5 (337-384)||(6738524-6738571)
chr5 (273-346)||(34205232-34205307)
chr5 (267-346)||(37588358-37588437)
chr5 (266-339)||(11707055-11707128)
chr5 (295-340)||(17368675-17368720)
chr5 (298-346)||(912677-912725)
chr5 (295-347)||(2568650-2568702)
chr5 (337-381)||(2569819-2569863)
chr5 (295-347)||(10272457-10272509)
chr5 (279-347)||(12425563-12425631)
chr5 (298-346)||(14257458-14257506)
chr5 (337-381)||(29588789-29588833)
chr5 (302-346)||(34117569-34117613)
[»] chr7 (17 HSPs)
chr7 (292-345)||(36370663-36370716)
chr7 (295-346)||(44151506-44151557)
chr7 (292-346)||(30456473-30456527)
chr7 (205-319)||(35267382-35267496)
chr7 (295-351)||(39542326-39542382)
chr7 (295-346)||(31338501-31338552)
chr7 (196-238)||(34036031-34036073)
chr7 (295-357)||(46056036-46056098)
chr7 (295-353)||(46104593-46104651)
chr7 (205-238)||(7513673-7513706)
chr7 (295-348)||(44241850-44241903)
chr7 (295-347)||(3610766-3610818)
chr7 (295-347)||(12110352-12110404)
chr7 (295-343)||(20881662-20881710)
chr7 (294-346)||(27481319-27481371)
chr7 (295-347)||(30812140-30812192)
chr7 (295-343)||(44910600-44910648)
[»] chr4 (11 HSPs)
chr4 (292-351)||(56480336-56480395)
chr4 (253-348)||(42121479-42121573)
chr4 (295-346)||(49219132-49219183)
chr4 (263-345)||(29263364-29263446)
chr4 (261-326)||(35743295-35743360)
chr4 (305-346)||(16494841-16494882)
chr4 (265-345)||(1137706-1137786)
chr4 (295-343)||(1706618-1706666)
chr4 (268-348)||(7694009-7694089)
chr4 (295-351)||(14011222-14011278)
chr4 (341-381)||(46860278-46860318)
[»] chr8 (10 HSPs)
chr8 (295-344)||(7918799-7918848)
chr8 (296-351)||(30627929-30627984)
chr8 (338-380)||(26716554-26716596)
chr8 (302-348)||(31891882-31891928)
chr8 (295-344)||(7645973-7646022)
chr8 (295-348)||(8062320-8062373)
chr8 (305-346)||(9834825-9834866)
chr8 (294-346)||(4558791-4558843)
chr8 (337-369)||(6966829-6966861)
chr8 (263-347)||(10383877-10383961)
[»] chr6 (6 HSPs)
chr6 (265-346)||(2112193-2112274)
chr6 (295-348)||(31812039-31812092)
chr6 (295-347)||(1401101-1401153)
chr6 (337-381)||(3737978-3738022)
chr6 (53-104)||(17920491-17920543)
chr6 (294-342)||(33067155-33067203)
[»] chr1 (15 HSPs)
chr1 (295-348)||(7472302-7472355)
chr1 (263-348)||(34290227-34290312)
chr1 (291-347)||(15515533-15515589)
chr1 (295-343)||(39347993-39348041)
chr1 (295-346)||(12564900-12564951)
chr1 (71-102)||(25971088-25971119)
chr1 (291-333)||(29834927-29834969)
chr1 (295-361)||(35590918-35590984)
chr1 (263-333)||(35925696-35925766)
chr1 (337-383)||(52013804-52013850)
chr1 (299-344)||(2778661-2778706)
chr1 (279-340)||(26779935-26779996)
chr1 (302-346)||(1432508-1432552)
chr1 (266-346)||(30257676-30257756)
chr1 (295-346)||(30259512-30259564)
[»] chr3 (11 HSPs)
chr3 (295-347)||(36139870-36139922)
chr3 (295-346)||(27792865-27792916)
chr3 (295-346)||(43115049-43115100)
chr3 (294-348)||(22203421-22203475)
chr3 (279-345)||(30322030-30322096)
chr3 (298-343)||(33965518-33965563)
chr3 (295-348)||(42733963-42734016)
chr3 (304-348)||(2100190-2100234)
chr3 (295-347)||(21500930-21500981)
chr3 (213-269)||(27795944-27796000)
chr3 (295-346)||(50952325-50952377)
[»] chr2 (10 HSPs)
chr2 (266-342)||(16867736-16867812)
chr2 (279-346)||(43141864-43141931)
chr2 (265-326)||(41817181-41817242)
chr2 (294-346)||(757448-757500)
chr2 (335-379)||(9404511-9404555)
chr2 (342-382)||(34339031-34339071)
chr2 (294-346)||(39983335-39983387)
chr2 (299-347)||(43199406-43199454)
chr2 (255-347)||(43910985-43911077)
chr2 (295-339)||(43985029-43985073)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 29054973 - 29054901
Alignment:
Q  274 tgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29054973 tgttcataagttgtgtacaatttatttccataagctctacatgatagtttatggaaacaacttatagcttata 29054901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 33533536 - 33533612
Alignment:
Q  266 ttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagct 342  Q
    |||||| || || ||||||||| | ||| ||||||||||||||||| |||||||| || || ||||| |||||||||    
T  33533536 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 33533612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 6738524 - 6738571
Alignment:
Q  337 atagcttatacataagcatttatatcataagtgtttacgctataaact 384  Q
    |||||||||||||||| | |||||| ||||||||||| ||||||||||    
T  6738524 atagcttatacataagtacttatatgataagtgtttatgctataaact 6738571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 34205307 - 34205232
Alignment:
Q  273 atgttgataagttgtgtaca-atttatttccataagctcta-caagatagtttatggaaacaacttatagcttata 346  Q
    ||||| ||||||||| | || ||||||||||||||||| |  |||||||| ||||| |||||||||||||||||||    
T  34205307 atgttcataagttgttttcacatttatttccataagctttttcaagatagcttatgaaaacaacttatagcttata 34205232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 37588358 - 37588437
Alignment:
Q  267 tatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||||||| ||||| ||| | ||  ||||||||||||||||| ||  |||  ||||| |||||||||||||||||||    
T  37588358 tatgaaatgttaataagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttata 37588437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 11707128 - 11707055
Alignment:
Q  266 ttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttata 339  Q
    |||||| ||||| ||||||||| | ||  |||||| || |||||||||||||||| ||||| ||||| ||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 17368720 - 17368675
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatag 340  Q
    |||||||||||| |||| |||||||| ||||| |||||||||||||    
T  17368720 ttatttccataacctctccaagatagcttatgaaaacaacttatag 17368675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 912677 - 912725
Alignment:
Q  298 tttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||||| | |||||||||||||  ||||||||||| |||||||    
T  912677 tttccataagctttccaagatagtttataaaaacaacttattgcttata 912725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 2568702 - 2568650
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||||| ||| |||||| || ||||| ||||| ||||||||||||||||||||    
T  2568702 ttattttcattagctctccatgatagcttatgaaaacaacttatagcttatac 2568650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 2569819 - 2569863
Alignment:
Q  337 atagcttatacataagcatttatatcataagtgtttacgctataa 381  Q
    |||||||||||||||||| |||||| |||| |||||||| |||||    
T  2569819 atagcttatacataagcacttatatgataaatgtttacggtataa 2569863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 10272457 - 10272509
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||||| ||||| |||| |||||| | ||||| ||||||||||||||||||||    
T  10272457 ttattttcataaactctccaagatggcttatgaaaacaacttatagcttatac 10272509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 12425631 - 12425563
Alignment:
Q  279 ataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||| | ||| |||||| |||||| ||| |||||||| || || ||||| ||||||||||||||    
T  12425631 ataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatac 12425563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 14257506 - 14257458
Alignment:
Q  298 tttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||| ||||||| |||||||||||||| ||||| |||||| ||||||    
T  14257506 tttccacaagctctccaagatagtttatgaaaacaccttataacttata 14257458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 29588833 - 29588789
Alignment:
Q  337 atagcttatacataagcatttatatcataagtgtttacgctataa 381  Q
    |||||||||||||||||| |||||| | ||||||||| |||||||    
T  29588833 atagcttatacataagcacttatataaaaagtgtttatgctataa 29588789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 34117569 - 34117613
Alignment:
Q  302 cataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||| |||||||| ||||| || ||||||||||||||||    
T  34117569 cataagctctccaagatagcttatgaaagcaacttatagcttata 34117613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 36370716 - 36370663
Alignment:
Q  292 aatttatttccataagctctacaagatagtttatggaaacaacttatagcttat 345  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  36370716 aatttatttccataagctcttcaggatagtttatggaaacaacttatagcttat 36370663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 44151506 - 44151557
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  44151506 ttatttccataagcttttcaagatagtttatgaaaacaacttatagcttata 44151557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 30456473 - 30456527
Alignment:
Q  292 aatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||||| ||||||    
T  30456473 aatttattttcataagctctccaagatagtttatgaaaaccacttataacttata 30456527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 35267496 - 35267382
Alignment:
Q  205 tgaatcgacttatttgagcttatctactggcatagtaacgtatgaaagtgtttgagagagcttatgaaatgttgataagttgtgtacaatttatttccat 304  Q
    ||||| ||||||||||||||||||||||  ||||  ||| |||||   | ||||||| ||||||||| ||||| ||| ||||| | ||  ||||||| ||    
T  35267496 tgaattgacttatttgagcttatctactaccatatgaacttatgagcctatttgagaaagcttatgacatgttcataggttgttttcagcttatttctat 35267397  T
Q  305 aagctctacaagata 319  Q
    ||||||| |||||||    
T  35267396 aagctctccaagata 35267382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 39542326 - 39542382
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataa 351  Q
    |||||| |||||||||| || ||||  |||||||||||||||||| |||||||||||    
T  39542326 ttattttcataagctctccaggataacttatggaaacaacttatatcttatacataa 39542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 31338552 - 31338501
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||| ||||||||| | | |||||||||||||||||||||||| ||||||    
T  31338552 ttattttcataagctccataggatagtttatggaaacaacttataacttata 31338501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 34036073 - 34036031
Alignment:
Q  196 gagtctgtctgaatcgacttatttgagcttatctactggcata 238  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||    
T  34036073 gagtctgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 46056036 - 46056098
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataagcattt 357  Q
    |||||||||||||||||||  ||||| ||||| |||||| |||||||||| ||| || |||||    
T  46056036 ttatttccataagctctacgggatagcttatgaaaacaatttatagcttacacaaaaacattt 46056098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 46104593 - 46104651
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataagc 353  Q
    |||||| |||||||||| ||  |||| ||||| ||||||||||||||||||| ||||||    
T  46104593 ttattttcataagctcttcagcatagcttatgaaaacaacttatagcttataaataagc 46104651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 7513706 - 7513673
Alignment:
Q  205 tgaatcgacttatttgagcttatctactggcata 238  Q
    ||||| ||||||||||||||||||||||||||||    
T  7513706 tgaattgacttatttgagcttatctactggcata 7513673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 44241903 - 44241850
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    ||||||| ||||||| | |||||||| ||||| ||||||||||||| |||||||    
T  44241903 ttatttctataagctattcaagatagcttatgaaaacaacttataggttataca 44241850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 3610766 - 3610818
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||| |||||||||  | ||||||||| | ||||||||||||||||||||    
T  3610766 ttatttctataagctctctaggatagtttacgaaaacaacttatagcttatac 3610818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 12110404 - 12110352
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||||| |||||| ||| |||||||| ||||| ||||| ||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatac 12110352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 20881662 - 20881710
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctt 343  Q
    |||||| |||||| |||  ||||||||||||| ||||||||||||||||    
T  20881662 ttattttcataagttctttaagatagtttatgaaaacaacttatagctt 20881710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 27481319 - 27481371
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||||||||| | || ||||| ||||| ||| |||||||||||||||    
T  27481319 tttatttccataagctatccatgatagcttatgaaaataacttatagcttata 27481371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 30812192 - 30812140
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||||||||||| || ||||| | ||| ||||| ||||||||||||||    
T  30812192 ttatttccataagctctccatgatagctaatgaaaacagcttatagcttatac 30812140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 44910648 - 44910600
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctt 343  Q
    ||||||||| ||||||| || ||||||||||| ||||||||| ||||||    
T  44910648 ttatttccacaagctctccatgatagtttatgaaaacaacttttagctt 44910600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 56480395 - 56480336
Alignment:
Q  292 aatttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataa 351  Q
    ||||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||||    
T  56480395 aatttattttcataagctctccaagatagtttatgaaaacagcttataacttatacataa 56480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 42121573 - 42121479
Alignment:
Q  253 tgtttgagagagcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    ||||||||||| ||||||| ||||| ||||| ||| | ||  ||||||||| ||| ||| |||||||| | ||| |||||||||||||||||||||    
T  42121573 tgtttgagagaacttatgacatgttcataagctgttt-cagcttatttccacaagttctccaagatagctcatgaaaacaacttatagcttataca 42121479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 49219183 - 49219132
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||||| ||||  ||||||||||||| |||||||||||||||||||    
T  49219183 ttatttccataatctctttaagatagtttatgaaaacaacttatagcttata 49219132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 29263446 - 29263364
Alignment:
Q  263 agcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttat 345  Q
    ||||||||| ||||| ||||||||| | ||  ||||||||| ||||||| || ||||| ||||| ||||||||||| ||||||    
T  29263446 agcttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaacttatcgcttat 29263364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 35743360 - 35743295
Alignment:
Q  261 agagcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatg 326  Q
    ||||||||||| ||||| ||||||||| | ||| |||||||||||| |||| || |||||||||||    
T  35743360 agagcttatgacatgtttataagttgtttccaacttatttccataaactcttcatgatagtttatg 35743295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 16494841 - 16494882
Alignment:
Q  305 aagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||| |||||||| ||||| |||||||||||||||||||    
T  16494841 aagctctccaagatagcttatgaaaacaacttatagcttata 16494882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 1137786 - 1137706
Alignment:
Q  265 cttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttat 345  Q
    ||||||| ||||| ||||||||| | || ||||||||||||||||||    ||||||||||| || || ||||||| ||||    
T  1137786 cttatgacatgttcataagttgttttcagtttatttccataagctctcttggatagtttatgaaagcagcttatagattat 1137706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 1706666 - 1706618
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctt 343  Q
    |||||| |||||||| | |||||||||||||| ||||| ||||||||||    
T  1706666 ttattttcataagctgtccaagatagtttatgaaaacagcttatagctt 1706618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 7694009 - 7694089
Alignment:
Q  268 atgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||| ||||| ||||||||| | ||  |||||||||||| |||| || ||||  ||||| ||||| |||||||||||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttataca 7694089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 14011278 - 14011222
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataa 351  Q
    ||||||||||||||||| |||||||| ||||| |||||  || ||||||||| ||||    
T  14011278 ttatttccataagctctccaagatagcttatgtaaacattttgtagcttatatataa 14011222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 46860318 - 46860278
Alignment:
Q  341 cttatacataagcatttatatcataagtgtttacgctataa 381  Q
    ||||| |||||||| |||||||||||||||||| |||||||    
T  46860318 cttattcataagcacttatatcataagtgtttatgctataa 46860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 7918799 - 7918848
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctta 344  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  7918799 ttatttccacaagctctacaagatagcttatgaaaacaacttatagctta 7918848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 30627929 - 30627984
Alignment:
Q  296 tatttccataagctctacaagatagtttatggaaacaacttatagcttatacataa 351  Q
    ||||||||||||||||  ||||||  ||||| ||||||||||||||||| ||||||    
T  30627929 tatttccataagctctctaagataacttatgaaaacaacttatagcttacacataa 30627984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 26716554 - 26716596
Alignment:
Q  338 tagcttatacataagcatttatatcataagtgtttacgctata 380  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||    
T  26716554 tagcttatacataagcacttatataataagtgtttatgctata 26716596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 31891928 - 31891882
Alignment:
Q  302 cataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||||||||| ||| |||| ||||| |||||||||||||||||||||    
T  31891928 cataagctcttcaatatagcttatgaaaacaacttatagcttataca 31891882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 7646022 - 7645973
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctta 344  Q
    ||||||||||||||| |||| | ||| ||||| |||||||||||||||||    
T  7646022 ttatttccataagctttacaggttagcttatgaaaacaacttatagctta 7645973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 8062373 - 8062320
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||||||||||| ||||  ||||||| ||||| ||||| |||||||||||||||    
T  8062373 ttatttccataatctctctaagatagcttatgaaaacagcttatagcttataca 8062320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 9834825 - 9834866
Alignment:
Q  305 aagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  9834825 aagctcaacaagatagcttatgaaaacaacttatagcttata 9834866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 4558843 - 4558791
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||||||||||||||  | ||||| ||||||||||| |||||||| ||||    
T  4558843 tttatttccataagctctctaggatagcttatggaaacagcttatagcatata 4558791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 6966861 - 6966829
Alignment:
Q  337 atagcttatacataagcatttatatcataagtg 369  Q
    ||||||||||||||||||||||||| |||||||    
T  6966861 atagcttatacataagcatttatatgataagtg 6966829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 347
Target Start/End: Complemental strand, 10383961 - 10383877
Alignment:
Q  263 agcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||| || || ||||| ||| ||||  |||||||||||||||||| | ||||||||| | ||||| | ||||| ||||||    
T  10383961 agcttatgacattttcataagctgtttacagcttatttccataagctctatatgatagtttacgaaaacagcatatagattatac 10383877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 2112274 - 2112193
Alignment:
Q  265 cttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||| ||||| ||||||||| | |  |||||||| |||||| ||  ||||||||||||| ||||||||||||| |||||    
T  2112274 cttatgacatgttcataagttgttttcggtttatttctataagcactctaagatagtttatgaaaacaacttatagtttata 2112193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 31812039 - 31812092
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  31812039 ttattttcataagctctccaagatagcttatgaaaacaacttatatcttataca 31812092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 1401153 - 1401101
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||| |||||||||||| || ||||| ||||| ||||| ||||||||||||||    
T  1401153 ttatctccataagctctccatgatagcttatgaaaacagcttatagcttatac 1401101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 3738022 - 3737978
Alignment:
Q  337 atagcttatacataagcatttatatcataagtgtttacgctataa 381  Q
    |||||||||||||||||| | |||  |||||||||||||||||||    
T  3738022 atagcttatacataagcactcatacgataagtgtttacgctataa 3737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 17920543 - 17920491
Alignment:
Q  53 ggttcaaacgtg-gattctacataaaatattctcacagccaaaccactaggct 104  Q
    ||||||||| || ||||| ||||||||| | ||||||||||||||||||||||    
T  17920543 ggttcaaacttgagattccacataaaatttcctcacagccaaaccactaggct 17920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 33067203 - 33067155
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagct 342  Q
    |||||||| | ||||||| |||||||| ||||| |||||||||||||||    
T  33067203 tttatttctacaagctctccaagatagcttatgaaaacaacttatagct 33067155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 7472355 - 7472302
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||||| |||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  7472355 ttattttcataagctctccaagatagcttatggaaacagcttatagattataca 7472302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 34290312 - 34290227
Alignment:
Q  263 agcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    ||||||||| || || ||||||||| | ||  |||||| |||||| ||| |||||||| ||||| ||||| |||||||||||||||    
T  34290312 agcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataca 34290227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 15515589 - 15515533
Alignment:
Q  291 caatttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||||||||||||| | || ||||  ||||| ||||||||||||||||||||    
T  15515589 caatttatttccataagctatccatgataacttatgaaaacaacttatagcttatac 15515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 39347993 - 39348041
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagctt 343  Q
    ||||||||||||||| | || ||||||||||| ||||||||||||||||    
T  39347993 ttatttccataagctttgcaggatagtttatgaaaacaacttatagctt 39348041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 12564900 - 12564951
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||| ||||| ||| ||||||| ||||| |||||||||||||||||||    
T  12564900 ttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttata 12564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 25971088 - 25971119
Alignment:
Q  71 acataaaatattctcacagccaaaccactagg 102  Q
    ||||||||||||||||||||||||||||||||    
T  25971088 acataaaatattctcacagccaaaccactagg 25971119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 29834927 - 29834969
Alignment:
Q  291 caatttatttccataagctctacaagatagtttatggaaacaa 333  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  29834927 caatttatttccataagctctacatgatagcttatgaaaacaa 29834969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 35590918 - 35590984
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatacataagcatttatat 361  Q
    ||||||||||||||||| || ||||| ||||| || | |||||||||||||||| || || ||||||    
T  35590918 ttatttccataagctctccatgatagcttatgaaatcgacttatagcttatacaaaaacacttatat 35590984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 35925766 - 35925696
Alignment:
Q  263 agcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaa 333  Q
    ||||||||| ||||| ||||| ||| | ||| |||||||||||| |||| || ||||| ||||||||||||    
T  35925766 agcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatggaaacaa 35925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 52013850 - 52013804
Alignment:
Q  337 atagcttatacataagcatttatatcataagtgtttacgctataaac 383  Q
    |||||||||||||||||||||| || |||||| |||| |||||||||    
T  52013850 atagcttatacataagcatttacatgataagtatttatgctataaac 52013804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 2778706 - 2778661
Alignment:
Q  299 ttccataagctctacaagatagtttatggaaacaacttatagctta 344  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||    
T  2778706 ttccataagctcttcaagatagtttatgaatacaacttataactta 2778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 26779935 - 26779996
Alignment:
Q  279 ataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatag 340  Q
    ||||||||| | ||| |||||| |||||| ||| |||||||| ||||| |||||||||||||    
T  26779935 ataagttgttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttatag 26779996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 1432552 - 1432508
Alignment:
Q  302 cataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||| ||| |||||||||||||| |||||| ||||||||||||    
T  1432552 cataagttctccaagatagtttatgaaaacaatttatagcttata 1432508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 30257756 - 30257676
Alignment:
Q  266 ttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||| ||||| ||||| ||| | ||  ||||||| |||||| || || ||||||||||| |||||||||| ||||||||    
T  30257756 ttatgacatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttata 30257676  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 30259512 - 30259564
Alignment:
Q  295 ttatttccataagctctacaagatag-tttatggaaacaacttatagcttata 346  Q
    ||||||||||||||||| || ||||| |||||| ||||| |||||||||||||    
T  30259512 ttatttccataagctctccatgatagctttatgcaaacagcttatagcttata 30259564  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 36139922 - 36139870
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||||| |||||||||| ||||||||| ||  |||||||||||||||||||||    
T  36139922 ttattttcataagctcttcaagatagtataatgaaacaacttatagcttatac 36139870  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 27792916 - 27792865
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||| |||||||||||| ||||||||||| |||||||||  ||||||||    
T  27792916 ttatttctataagctctacatgatagtttatgaaaacaacttgcagcttata 27792865  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 43115100 - 43115049
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||||||||||  | ||||||| ||| |||||||||||||||||||    
T  43115100 ttatttccataagctctcaatgatagttcatgaaaacaacttatagcttata 43115049  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 22203475 - 22203421
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    ||||||| |||||| ||| |||||||| ||||| ||||||||||||| |||||||    
T  22203475 tttattttcataagttctccaagatagcttatgaaaacaacttatagattataca 22203421  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 30322030 - 30322096
Alignment:
Q  279 ataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttat 345  Q
    ||||| ||||| |||||||||||||||||||||  | ||||  ||||| |||||||||| |||||||    
T  30322030 ataagctgtgttcaatttatttccataagctctttaggataacttatgaaaacaacttacagcttat 30322096  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 33965518 - 33965563
Alignment:
Q  298 tttccataagctctacaagatagtttatggaaacaacttatagctt 343  Q
    |||||||||||||| |||||||| ||||| ||||| ||||||||||    
T  33965518 tttccataagctcttcaagatagcttatgaaaacatcttatagctt 33965563  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 42733963 - 42734016
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    ||||||||||||||||| || ||||| |  || |||||||||||||||||||||    
T  42733963 ttatttccataagctctccacgatagctggtgaaaacaacttatagcttataca 42734016  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 2100190 - 2100234
Alignment:
Q  304 taagctctacaagatagtttatggaaacaacttatagcttataca 348  Q
    |||||||| |||||||  ||||| |||||||||||||||||||||    
T  2100190 taagctctccaagataacttatgaaaacaacttatagcttataca 2100234  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 21500981 - 21500930
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||| |||||||| ||||||||||| | |||||||||| |||||||||    
T  21500981 ttatttccaaaagctctaaaagatagtttacgaaaacaactta-agcttatac 21500930  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 27795944 - 27796000
Alignment:
Q  213 cttatttgagcttatctactggcatagtaacgtatgaaagtgtttgagagagcttat 269  Q
    ||||||||||||||||||||||||||   || | ||||| ||||| |||||||||||    
T  27795944 cttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 50952377 - 50952325
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaact-tatagcttata 346  Q
    ||||||||||||||||| |||||||||||||   ||||||| |||||||||||    
T  50952377 ttatttccataagctctccaagatagtttattacaacaactatatagcttata 50952325  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 16867812 - 16867736
Alignment:
Q  266 ttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagct 342  Q
    |||||| || || ||||||||| | ||| ||||||||||||||||| |||||||| || || ||||| |||||||||    
T  16867812 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 16867736  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 43141931 - 43141864
Alignment:
Q  279 ataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||||| | || ||||||||||||| |||| || ||||| ||||| ||||| |||||||||||||    
T  43141931 ataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatcttatagcttata 43141864  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 41817242 - 41817181
Alignment:
Q  265 cttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatg 326  Q
    ||||||| |||||||||| |||| | ||  ||||||||||||||||| || |||||||||||    
T  41817242 cttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatg 41817181  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 757500 - 757448
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    |||||||||||||||||| || |||| ||| || ||||| |||||||||||||    
T  757500 tttatttccataagctctccaggataatttttgaaaacatcttatagcttata 757448  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 9404555 - 9404511
Alignment:
Q  335 ttatagcttatacataagcatttatatcataagtgtttacgctat 379  Q
    |||||| ||||||||||||| |||||| ||||||||||| |||||    
T  9404555 ttatagtttatacataagcacttatatgataagtgtttatgctat 9404511  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 34339071 - 34339031
Alignment:
Q  342 ttatacataagcatttatatcataagtgtttacgctataaa 382  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  34339071 ttatacataagcacttatatgataagtgtttatgctataaa 34339031  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 39983387 - 39983335
Alignment:
Q  294 tttatttccataagctctacaagatagtttatggaaacaacttatagcttata 346  Q
    ||||||| ||| |||||| || ||||| ||||| |||||||||||||||||||    
T  39983387 tttattttcattagctctccaggatagcttatgaaaacaacttatagcttata 39983335  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 43199454 - 43199406
Alignment:
Q  299 ttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    |||| |||||| | || ||||||||||| ||||||||||||||||||||    
T  43199454 ttccttaagctgtccaggatagtttatgaaaacaacttatagcttatac 43199406  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 43910985 - 43911077
Alignment:
Q  255 tttgagagagcttatgaaatgttgataagttgtgtacaatttatttccataagctctacaagatagtttatggaaacaacttatagcttatac 347  Q
    ||||||||| ||||||| ||||| ||||||||| | ||  |||||  || ||||| | |||||||| || || ||||||||||| ||||||||    
T  43910985 tttgagagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaacaacttatggcttatac 43911077  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 43985029 - 43985073
Alignment:
Q  295 ttatttccataagctctacaagatagtttatggaaacaacttata 339  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  43985029 ttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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